PDB: 5DE2 — NEK NEK7_HUMAN

Total number of chains: 2
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGout None 1 50.0% 5DE2A
None None 1 50.0% 5DE2B
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
NEK NEK7 NEK7_HUMAN 5DE2A Q8TDX7 20 300 302.0 No_ligand No_ligand Inactive DFGout 15.9563 9.9752 None -128.71, -164.31 -159.55, 105.35 -134.06, 13.95 44.91, 64.73 -53.86, 999.0 out-out out 12.4547 Saltbr-out 10.1523 HRD-in -75.93, -50.83 83.71, -4.84 out-none-out SNCono none-out ActLoopNT-none 999.0 ActLoopCT-out nonTYR APEdihe_aaooo APEdist_nnno APE10-dihe-na -106.4, -83.92 APE9-dihe-na 54.75, 40.12 APE8-dihe-out -123.55, -175.62 APE8-rot-out 53.04 APE67-dihe-out -60.87, -48.39 -64.23, 167.36 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-none 999.0 APE9-dist-out 13.5829 Y97F None None XRAY 2.78 0.208 0.254 A 310.0 267.0 14 28 14 14 [[34, 294]] 1.0 5de2 NEK_NEK7_HUMAN NEK 1.1e-109 371.9 1.0 255.0 255.0 178 179 180 182 184 63 82 86 158 160 159 161.0 218 206 201 200 199 198 197 196 195 112 Serine/threonine-protein kinase Nek7
NEK NEK7 NEK7_HUMAN 5DE2B Q8TDX7 20 300 302.0 No_ligand No_ligand Inactive None 999.0 999.0 None -122.26, 169.15 -110.33, -36.5 -85.96, 999.0 999.0, 999.0 999.0, 999.0 out-out out 12.616 Saltbr-out 10.4059 HRD-in -69.6, -49.19 79.72, -12.68 out-none-none SNConn none-none ActLoopNT-none 999.0 ActLoopCT-none nonTYR APEdihe_aannn APEdist_nnnn APE10-dihe-na 999.0, 999.0 APE9-dihe-na 999.0, 999.0 APE8-dihe-none 999.0, 999.0 APE8-rot-none 999.0 APE67-dihe-none -73.41, -54.18 999.0, 123.9 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-none 999.0 APE9-dist-none 999.0 Y97F None None XRAY 2.78 0.208 0.254 B 310.0 262.0 19 28 9 19 [[34, 294]] 1.0 5de2 NEK_NEK7_HUMAN NEK 1.1e-109 371.9 1.0 255.0 255.0 178 179 180 182 184 63 82 86 158 160 159 161.0 218 206 201 200 199 198 197 196 195 112 Serine/threonine-protein kinase Nek7

PDB: 5DE2 — NEK NEK7_HUMAN

Total number of chains: 2
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGout None 1 50.0% 5DE2A
None None 1 50.0% 5DE2B
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
NEK NEK7 NEK7_HUMAN 5DE2A Q8TDX7 20 300 302.0 No_ligand No_ligand Inactive DFGout 15.9563 9.9752 None -128.71, -164.31 -159.55, 105.35 -134.06, 13.95 44.91, 64.73 -53.86, 999.0 out-out out 12.4547 Saltbr-out 10.1523 HRD-in -75.93, -50.83 83.71, -4.84 out-none-out SNCono none-out ActLoopNT-none 999.0 ActLoopCT-out nonTYR APEdihe_aaooo APEdist_nnno APE10-dihe-na -106.4, -83.92 APE9-dihe-na 54.75, 40.12 APE8-dihe-out -123.55, -175.62 APE8-rot-out 53.04 APE67-dihe-out -60.87, -48.39 -64.23, 167.36 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-none 999.0 APE9-dist-out 13.5829 Y97F None None XRAY 2.78 0.208 0.254 A 310.0 267.0 14 28 14 14 [[34, 294]] 1.0 5de2 Homo sapiens NEK_NEK7_HUMAN NEK 1.1e-109 371.9 1.0 255.0 255.0 178 179 180 182 184 63 82 86 158 160 159 161.0 218 206 201 200 199 198 197 196 195 112 Serine/threonine-protein kinase Nek7
NEK NEK7 NEK7_HUMAN 5DE2B Q8TDX7 20 300 302.0 No_ligand No_ligand Inactive None 999.0 999.0 None -122.26, 169.15 -110.33, -36.5 -85.96, 999.0 999.0, 999.0 999.0, 999.0 out-out out 12.616 Saltbr-out 10.4059 HRD-in -69.6, -49.19 79.72, -12.68 out-none-none SNConn none-none ActLoopNT-none 999.0 ActLoopCT-none nonTYR APEdihe_aannn APEdist_nnnn APE10-dihe-na 999.0, 999.0 APE9-dihe-na 999.0, 999.0 APE8-dihe-none 999.0, 999.0 APE8-rot-none 999.0 APE67-dihe-none -73.41, -54.18 999.0, 123.9 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-none 999.0 APE9-dist-none 999.0 Y97F None None XRAY 2.78 0.208 0.254 B 310.0 262.0 19 28 9 19 [[34, 294]] 1.0 5de2 Homo sapiens NEK_NEK7_HUMAN NEK 1.1e-109 371.9 1.0 255.0 255.0 178 179 180 182 184 63 82 86 158 160 159 161.0 218 206 201 200 199 198 197 196 195 112 Serine/threonine-protein kinase Nek7

PDB: 5DE2 — NEK NEK7_HUMAN

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name