PDB: 8R9B — CMGC CDK7_HUMAN

Total number of chains: 4
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin None 4 100.0% 8R9BA
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CMGC CDK7 CDK7_HUMAN 8R9BA P50613 1 311 346.0 ANP:401 ATPlike Inactive DFGin 6.6665 15.0398 None -136.41, -179.13 75.36, -66.57 59.32, 16.33 291.11, 69.78 55.95, 32.69 out-out out 13.486 Saltbr-out 13.7543 HRD-in -65.3, -54.78 73.94, 0.68 out-out-out SNCooo out-out ActLoopNT-out 12.5504 ActLoopCT-out nonTYR APEdihe_aaooi APEdist_oooo APE10-dihe-na -74.63, 115.42 APE9-dihe-na -115.54, -2.31 APE8-dihe-out -56.05, -31.84 APE8-rot-out 157.42 APE67-dihe-in -63.34, -23.16 -66.49, -24.29 APE12-dist-out 18.0017 APE11-dist-out 20.1866 APE10-dist-out 16.0858 APE9-dist-out 11.4652 S164D,T170E None None XRAY 2.21 0.195 0.243 A 352.0 301.0 10 28 28 0 [[12, 295]] 1.0 8r9b CMGC_CDK7_HUMAN CMGC 5.9e-78 269.9 1.0 301.0 301.0 154 155 156 158 160 41 62 66 134 136 135 137.0 195 182 177 176 175 174 173 172 171 92 Cyclin-dependent kinase 7
CMGC CDK7 CDK7_HUMAN 8R9BB P50613 3 310 346.0 ANP:402 ATPlike Inactive DFGin 6.5631 15.0836 None -126.22, 177.01 84.52, -73.28 65.77, 22.93 292.14, 76.04 47.33, 39.02 out-out out 13.6069 Saltbr-out 11.882 HRD-in -71.08, -53.54 74.78, -6.63 out-out-out SNCooo out-out ActLoopNT-out 12.9359 ActLoopCT-out nonTYR APEdihe_aaooi APEdist_oooo APE10-dihe-na -81.04, 115.32 APE9-dihe-na -115.04, 1.93 APE8-dihe-out -60.49, -32.76 APE8-rot-out 168.86 APE67-dihe-in -59.67, -24.77 -68.61, -28.01 APE12-dist-out 17.7792 APE11-dist-out 20.1865 APE10-dist-out 16.1566 APE9-dist-out 11.4157 S164D,T170E None None XRAY 2.21 0.195 0.243 B 352.0 298.0 10 28 28 0 [[12, 295]] 1.0 8r9b CMGC_CDK7_HUMAN CMGC 5.9e-78 269.9 1.0 301.0 301.0 154 155 156 158 160 41 62 66 134 136 135 137.0 195 182 177 176 175 174 173 172 171 92 Cyclin-dependent kinase 7
CMGC CDK7 CDK7_HUMAN 8R9BC P50613 8 311 346.0 ANP:402 ATPlike Inactive DFGin 6.4512 15.3403 None -116.21, 176.78 77.39, -97.04 64.16, 26.01 311.61, 20.83 46.47, 58.36 out-out out 13.1044 Saltbr-out 12.1328 HRD-in -78.41, -55.45 77.67, -2.52 out-out-out SNCooo out-out ActLoopNT-out 12.9218 ActLoopCT-out nonTYR APEdihe_aaoii APEdist_nnoo APE10-dihe-na 999.0, 132.76 APE9-dihe-na -87.2, -35.35 APE8-dihe-out -49.87, -35.32 APE8-rot-in 271.7 APE67-dihe-in -63.34, -21.13 -58.67, -34.22 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-out 17.9279 APE9-dist-out 10.9338 S164D,T170E None None XRAY 2.21 0.195 0.243 C 352.0 276.0 28 28 16 12 [[12, 295]] 1.0 8r9b CMGC_CDK7_HUMAN CMGC 5.9e-78 269.9 1.0 301.0 301.0 154 155 156 158 160 41 62 66 134 136 135 137.0 195 182 177 176 175 174 173 172 171 92 Cyclin-dependent kinase 7
CMGC CDK7 CDK7_HUMAN 8R9BD P50613 9 311 346.0 ANP:402 ATPlike Inactive DFGin 5.1856 15.5294 None -119.23, -173.72 58.44, -119.7 56.58, 114.74 106.06, 59.9 70.5, -151.21 out-out out 13.0617 Saltbr-out 12.3535 HRD-in -80.52, -56.05 80.67, -8.56 out-out-out SNCooo out-out ActLoopNT-out 13.0554 ActLoopCT-out nonTYR APEdihe_aaooi APEdist_nnoo APE10-dihe-na 999.0, -29.49 APE9-dihe-na -113.47, -32.42 APE8-dihe-out -62.11, -27.52 APE8-rot-out 75.68 APE67-dihe-in -62.12, -24.79 -50.05, -35.03 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-out 18.1604 APE9-dist-out 11.1556 S164D,T170E None None XRAY 2.21 0.195 0.243 D 352.0 277.0 26 28 18 10 [[12, 295]] 1.0 8r9b CMGC_CDK7_HUMAN CMGC 5.9e-78 269.9 1.0 301.0 301.0 154 155 156 158 160 41 62 66 134 136 135 137.0 195 182 177 176 175 174 173 172 171 92 Cyclin-dependent kinase 7

PDB: 8R9B — CMGC CDK7_HUMAN

Total number of chains: 4
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin None 4 100.0% 8R9BA
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CMGC CDK7 CDK7_HUMAN 8R9BA P50613 1 311 346.0 ANP:401 ATPlike Inactive DFGin 6.6665 15.0398 None -136.41, -179.13 75.36, -66.57 59.32, 16.33 291.11, 69.78 55.95, 32.69 out-out out 13.486 Saltbr-out 13.7543 HRD-in -65.3, -54.78 73.94, 0.68 out-out-out SNCooo out-out ActLoopNT-out 12.5504 ActLoopCT-out nonTYR APEdihe_aaooi APEdist_oooo APE10-dihe-na -74.63, 115.42 APE9-dihe-na -115.54, -2.31 APE8-dihe-out -56.05, -31.84 APE8-rot-out 157.42 APE67-dihe-in -63.34, -23.16 -66.49, -24.29 APE12-dist-out 18.0017 APE11-dist-out 20.1866 APE10-dist-out 16.0858 APE9-dist-out 11.4652 S164D,T170E None None XRAY 2.21 0.195 0.243 A 352.0 301.0 10 28 28 0 [[12, 295]] 1.0 8r9b Homo sapiens CMGC_CDK7_HUMAN CMGC 5.9e-78 269.9 1.0 301.0 301.0 154 155 156 158 160 41 62 66 134 136 135 137.0 195 182 177 176 175 174 173 172 171 92 Cyclin-dependent kinase 7
CMGC CDK7 CDK7_HUMAN 8R9BB P50613 3 310 346.0 ANP:402 ATPlike Inactive DFGin 6.5631 15.0836 None -126.22, 177.01 84.52, -73.28 65.77, 22.93 292.14, 76.04 47.33, 39.02 out-out out 13.6069 Saltbr-out 11.882 HRD-in -71.08, -53.54 74.78, -6.63 out-out-out SNCooo out-out ActLoopNT-out 12.9359 ActLoopCT-out nonTYR APEdihe_aaooi APEdist_oooo APE10-dihe-na -81.04, 115.32 APE9-dihe-na -115.04, 1.93 APE8-dihe-out -60.49, -32.76 APE8-rot-out 168.86 APE67-dihe-in -59.67, -24.77 -68.61, -28.01 APE12-dist-out 17.7792 APE11-dist-out 20.1865 APE10-dist-out 16.1566 APE9-dist-out 11.4157 S164D,T170E None None XRAY 2.21 0.195 0.243 B 352.0 298.0 10 28 28 0 [[12, 295]] 1.0 8r9b Homo sapiens CMGC_CDK7_HUMAN CMGC 5.9e-78 269.9 1.0 301.0 301.0 154 155 156 158 160 41 62 66 134 136 135 137.0 195 182 177 176 175 174 173 172 171 92 Cyclin-dependent kinase 7
CMGC CDK7 CDK7_HUMAN 8R9BC P50613 8 311 346.0 ANP:402 ATPlike Inactive DFGin 6.4512 15.3403 None -116.21, 176.78 77.39, -97.04 64.16, 26.01 311.61, 20.83 46.47, 58.36 out-out out 13.1044 Saltbr-out 12.1328 HRD-in -78.41, -55.45 77.67, -2.52 out-out-out SNCooo out-out ActLoopNT-out 12.9218 ActLoopCT-out nonTYR APEdihe_aaoii APEdist_nnoo APE10-dihe-na 999.0, 132.76 APE9-dihe-na -87.2, -35.35 APE8-dihe-out -49.87, -35.32 APE8-rot-in 271.7 APE67-dihe-in -63.34, -21.13 -58.67, -34.22 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-out 17.9279 APE9-dist-out 10.9338 S164D,T170E None None XRAY 2.21 0.195 0.243 C 352.0 276.0 28 28 16 12 [[12, 295]] 1.0 8r9b Homo sapiens CMGC_CDK7_HUMAN CMGC 5.9e-78 269.9 1.0 301.0 301.0 154 155 156 158 160 41 62 66 134 136 135 137.0 195 182 177 176 175 174 173 172 171 92 Cyclin-dependent kinase 7
CMGC CDK7 CDK7_HUMAN 8R9BD P50613 9 311 346.0 ANP:402 ATPlike Inactive DFGin 5.1856 15.5294 None -119.23, -173.72 58.44, -119.7 56.58, 114.74 106.06, 59.9 70.5, -151.21 out-out out 13.0617 Saltbr-out 12.3535 HRD-in -80.52, -56.05 80.67, -8.56 out-out-out SNCooo out-out ActLoopNT-out 13.0554 ActLoopCT-out nonTYR APEdihe_aaooi APEdist_nnoo APE10-dihe-na 999.0, -29.49 APE9-dihe-na -113.47, -32.42 APE8-dihe-out -62.11, -27.52 APE8-rot-out 75.68 APE67-dihe-in -62.12, -24.79 -50.05, -35.03 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-out 18.1604 APE9-dist-out 11.1556 S164D,T170E None None XRAY 2.21 0.195 0.243 D 352.0 277.0 26 28 18 10 [[12, 295]] 1.0 8r9b Homo sapiens CMGC_CDK7_HUMAN CMGC 5.9e-78 269.9 1.0 301.0 301.0 154 155 156 158 160 41 62 66 134 136 135 137.0 195 182 177 176 175 174 173 172 171 92 Cyclin-dependent kinase 7

PDB: 8R9B — CMGC CDK7_HUMAN

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name