PDB: AF-Q38SD2 — TKL LRRK1_HUMAN

Total number of chains: 2
Active chains: 2
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 100.0% AF-Q38SD2-K1A
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
TKL LRRK1 LRRK1_HUMAN AF-Q38SD2-K1A Q38SD2 1230 1530 2015.0 No_ligand No_ligand Active DFGin 6.6246 13.15 BLAminus -140.55, 169.76 59.74, 85.54 -99.91, 15.75 301.03, 85.83 -59.9, -29.19 in-in in 8.2094 Saltbr-in 2.7955 HRD-in -70.56, -36.78 65.97, -19.43 in-in-in SNCiii in-in ActLoopNT-in 2.8303 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -118.58, 159.49 APE9-dihe-na 112.38, 162.28 APE8-dihe-in -80.9, 130.89 APE8-rot-in 296.78 APE67-dihe-inflip 94.65, -25.72 -51.06, 134.24 APE12-dist-in 9.8817 APE11-dist-in 11.1292 APE10-dist-in 5.4361 APE9-dist-in 3.2469 None None None AF2 -1.0 1.0 1.0 A 301.0 301.0 0 26 26 0 [[1238, 1522]] 1.0 AF-Q38SD2-K1 TKL_LRRK1_HUMAN TKL 1.3e-73 253.8 5.0 266.0 262.0 1408 1409 1410 1412 1414 1270 1307 1311 1383 1385 1384 1386.0 1446 1434 1429 1428 1427 1426 1425 1424 1423 1335 Leucine-rich repeat serine/threonine-protein kinase 1
TKL LRRK1 LRRK1_HUMAN AF-Q38SD2-K3A Q38SD2 1230 1530 2015.0 No_ligand No_ligand Active DFGin 6.3459 14.1887 BLAminus -140.65, 173.47 64.6, 65.38 -84.53, 12.89 294.24, 85.13 -59.76, -32.57 in-in in 8.1053 Saltbr-in 2.7374 HRD-in -77.85, -38.43 69.18, -20.59 in-in-in SNCiii in-in ActLoopNT-in 2.8262 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -85.14, 152.41 APE9-dihe-na 147.32, 162.35 APE8-dihe-in -83.03, 128.01 APE8-rot-in 299.13 APE67-dihe-inflip 98.1, -28.11 -56.09, 131.5 APE12-dist-in 8.9179 APE11-dist-in 10.7333 APE10-dist-in 5.3427 APE9-dist-in 3.8101 None None None AF2 -1.0 1.0 1.0 A 301.0 301.0 0 26 26 0 [[1238, 1522]] 1.0 AF-Q38SD2-K3 TKL_LRRK1_HUMAN TKL 1.3e-73 253.8 5.0 266.0 262.0 1408 1409 1410 1412 1414 1270 1307 1311 1383 1385 1384 1386.0 1446 1434 1429 1428 1427 1426 1425 1424 1423 1335 Leucine-rich repeat serine/threonine-protein kinase 1

PDB: AF-Q38SD2 — TKL LRRK1_HUMAN

Total number of chains: 2
Active chains: 2
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 100.0% AF-Q38SD2-K1A
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
TKL LRRK1 LRRK1_HUMAN AF-Q38SD2-K1A Q38SD2 1230 1530 2015.0 No_ligand No_ligand Active DFGin 6.6246 13.15 BLAminus -140.55, 169.76 59.74, 85.54 -99.91, 15.75 301.03, 85.83 -59.9, -29.19 in-in in 8.2094 Saltbr-in 2.7955 HRD-in -70.56, -36.78 65.97, -19.43 in-in-in SNCiii in-in ActLoopNT-in 2.8303 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -118.58, 159.49 APE9-dihe-na 112.38, 162.28 APE8-dihe-in -80.9, 130.89 APE8-rot-in 296.78 APE67-dihe-inflip 94.65, -25.72 -51.06, 134.24 APE12-dist-in 9.8817 APE11-dist-in 11.1292 APE10-dist-in 5.4361 APE9-dist-in 3.2469 None None None AF2 -1.0 1.0 1.0 A 301.0 301.0 0 26 26 0 [[1238, 1522]] 1.0 AF-Q38SD2-K1 Homo sapiens TKL_LRRK1_HUMAN TKL 1.3e-73 253.8 5.0 266.0 262.0 1408 1409 1410 1412 1414 1270 1307 1311 1383 1385 1384 1386.0 1446 1434 1429 1428 1427 1426 1425 1424 1423 1335 Leucine-rich repeat serine/threonine-protein kinase 1
TKL LRRK1 LRRK1_HUMAN AF-Q38SD2-K3A Q38SD2 1230 1530 2015.0 No_ligand No_ligand Active DFGin 6.3459 14.1887 BLAminus -140.65, 173.47 64.6, 65.38 -84.53, 12.89 294.24, 85.13 -59.76, -32.57 in-in in 8.1053 Saltbr-in 2.7374 HRD-in -77.85, -38.43 69.18, -20.59 in-in-in SNCiii in-in ActLoopNT-in 2.8262 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -85.14, 152.41 APE9-dihe-na 147.32, 162.35 APE8-dihe-in -83.03, 128.01 APE8-rot-in 299.13 APE67-dihe-inflip 98.1, -28.11 -56.09, 131.5 APE12-dist-in 8.9179 APE11-dist-in 10.7333 APE10-dist-in 5.3427 APE9-dist-in 3.8101 None None None AF2 -1.0 1.0 1.0 A 301.0 301.0 0 26 26 0 [[1238, 1522]] 1.0 AF-Q38SD2-K3 Homo sapiens TKL_LRRK1_HUMAN TKL 1.3e-73 253.8 5.0 266.0 262.0 1408 1409 1410 1412 1414 1270 1307 1311 1383 1385 1384 1386.0 1446 1434 1429 1428 1427 1426 1425 1424 1423 1335 Leucine-rich repeat serine/threonine-protein kinase 1

PDB: AF-Q38SD2 — TKL LRRK1_HUMAN

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name