PDB: 8VH5 — TKL LRRK2_HUMAN

Total number of chains: 2
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGinter None 2 100.0% 8VH5A
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
TKL LRRK2 LRRK2_HUMAN 8VH5A Q5S007 12 2527 2527.0 ANP:2602 ATPlike Inactive DFGinter 9.7464 8.455 None -88.01, 106.84 -81.35, 17.64 -78.83, -10.5 197.42, 64.93 -68.71, -22.79 out-out out 11.3256 Saltbr-out 8.1229 HRD-in -105.05, -49.61 72.56, -5.72 out-out-out SNCooo out-out ActLoopNT-out 8.9614 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iioi APE10-dihe-na -67.06, -23.38 APE9-dihe-na 73.72, 168.0 APE8-dihe-in -68.8, 143.98 APE8-rot-out 58.99 APE67-dihe-in -65.74, -54.3 -73.05, -29.17 APE12-dist-in 9.6328 APE11-dist-in 8.4163 APE10-dist-out 13.3438 APE9-dist-in 3.8609 None None None EM 4.0 999.0 999.0 A 2527.0 2221.0 8 26 18 8 [[1875, 2134]] 1.0 8vh5 TKL_LRRK2_HUMAN TKL 3.8e-57 200.3 5.0 266.0 262.0 2016 2017 2018 2020 2022 1906 1920 1924 1991 1993 1992 1994.0 2055 2042 2037 2036 2035 2034 2033 2032 2031 1948 Leucine-rich repeat serine/threonine-protein kinase 2
TKL LRRK2 LRRK2_HUMAN 8VH5C Q5S007 12 2527 2527.0 ANP:2602 ATPlike Inactive DFGinter 9.746 8.4552 None -88.01, 106.86 -81.36, 17.7 -78.84, -10.6 197.4, 64.92 -68.66, -22.76 out-out out 11.3253 Saltbr-out 8.1217 HRD-in -104.99, -49.63 72.52, -5.67 out-out-out SNCooo out-out ActLoopNT-out 8.9613 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iioi APE10-dihe-na -66.98, -23.42 APE9-dihe-na 73.64, 168.02 APE8-dihe-in -68.73, 143.93 APE8-rot-out 59.0 APE67-dihe-in -65.76, -54.24 -73.07, -29.13 APE12-dist-in 9.6328 APE11-dist-in 8.4176 APE10-dist-out 13.3446 APE9-dist-in 3.8618 None None None EM 4.0 999.0 999.0 C 2527.0 2221.0 8 26 18 8 [[1875, 2134]] 1.0 8vh5 TKL_LRRK2_HUMAN TKL 3.8e-57 200.3 5.0 266.0 262.0 2016 2017 2018 2020 2022 1906 1920 1924 1991 1993 1992 1994.0 2055 2042 2037 2036 2035 2034 2033 2032 2031 1948 Leucine-rich repeat serine/threonine-protein kinase 2

PDB: 8VH5 — TKL LRRK2_HUMAN

Total number of chains: 2
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGinter None 2 100.0% 8VH5A
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
TKL LRRK2 LRRK2_HUMAN 8VH5A Q5S007 12 2527 2527.0 ANP:2602 ATPlike Inactive DFGinter 9.7464 8.455 None -88.01, 106.84 -81.35, 17.64 -78.83, -10.5 197.42, 64.93 -68.71, -22.79 out-out out 11.3256 Saltbr-out 8.1229 HRD-in -105.05, -49.61 72.56, -5.72 out-out-out SNCooo out-out ActLoopNT-out 8.9614 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iioi APE10-dihe-na -67.06, -23.38 APE9-dihe-na 73.72, 168.0 APE8-dihe-in -68.8, 143.98 APE8-rot-out 58.99 APE67-dihe-in -65.74, -54.3 -73.05, -29.17 APE12-dist-in 9.6328 APE11-dist-in 8.4163 APE10-dist-out 13.3438 APE9-dist-in 3.8609 None None None EM 4.0 999.0 999.0 A 2527.0 2221.0 8 26 18 8 [[1875, 2134]] 1.0 8vh5 Homo sapiens TKL_LRRK2_HUMAN TKL 3.8e-57 200.3 5.0 266.0 262.0 2016 2017 2018 2020 2022 1906 1920 1924 1991 1993 1992 1994.0 2055 2042 2037 2036 2035 2034 2033 2032 2031 1948 Leucine-rich repeat serine/threonine-protein kinase 2
TKL LRRK2 LRRK2_HUMAN 8VH5C Q5S007 12 2527 2527.0 ANP:2602 ATPlike Inactive DFGinter 9.746 8.4552 None -88.01, 106.86 -81.36, 17.7 -78.84, -10.6 197.4, 64.92 -68.66, -22.76 out-out out 11.3253 Saltbr-out 8.1217 HRD-in -104.99, -49.63 72.52, -5.67 out-out-out SNCooo out-out ActLoopNT-out 8.9613 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iioi APE10-dihe-na -66.98, -23.42 APE9-dihe-na 73.64, 168.02 APE8-dihe-in -68.73, 143.93 APE8-rot-out 59.0 APE67-dihe-in -65.76, -54.24 -73.07, -29.13 APE12-dist-in 9.6328 APE11-dist-in 8.4176 APE10-dist-out 13.3446 APE9-dist-in 3.8618 None None None EM 4.0 999.0 999.0 C 2527.0 2221.0 8 26 18 8 [[1875, 2134]] 1.0 8vh5 Homo sapiens TKL_LRRK2_HUMAN TKL 3.8e-57 200.3 5.0 266.0 262.0 2016 2017 2018 2020 2022 1906 1920 1924 1991 1993 1992 1994.0 2055 2042 2037 2036 2035 2034 2033 2032 2031 1948 Leucine-rich repeat serine/threonine-protein kinase 2

PDB: 8VH5 — TKL LRRK2_HUMAN

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name