PDB: 5YJ9 — OTHER PINK1_TRICA

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name

PDB: 5YJ9 — OTHER PINK1_TRICA

Total number of chains: 1
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin ABAminus 1 100.0% 5YJ9D
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
OTHER PINK1 PINK1_TRICA 5YJ9D D6WMX4 166 570 570.0 ANP:601 ATPlike Inactive DFGin 9.5017 15.2831 ABAminus -117.37, -38.64 -95.18, 97.77 -99.2, 13.92 280.74, 77.89 -62.77, -17.79 in-in in 7.8359 Saltbr-in 2.5799 HRD-out -70.37, 137.63 -130.59, 22.41 in-in-out SNCiio in-out ActLoopNT-in 2.5791 ActLoopCT-out nonTYR APEdihe_aaiao APEdist_iiii APE10-dihe-na -154.61, -176.52 APE9-dihe-na -54.92, 113.48 APE8-dihe-in -53.26, 148.57 APE8-rot-na 309.64 APE67-dihe-out -106.62, -9.97 -172.9, 165.52 APE12-dist-in 7.9748 APE11-dist-in 11.272 APE10-dist-in 7.1591 APE9-dist-in 3.2168 S205D,S377D,T386E,T530E None MSE197,MSE198,MSE208,MSE214,MSE223,MSE288,MSE294,MSE328,MSE380,MSE389 XRAY 2.53 0.23 0.243 D 423.0 343.0 56 34 34 0 [[61, 504]] 1.0 5yj9 Tribolium castaneum OTHER_PINK1_TRICA PINK1 5.8e-86 294.6 5.0 367.0 363.0 358 359 360 362 364 196 217 221 334 336 335 337.0 410 392 387 386 385 384 383 382 381 295 Serine/threonine-protein kinase Pink1, mitochondrial

PDB: 5YJ9 — OTHER PINK1_TRICA

Total number of chains: 1
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin ABAminus 1 100.0% 5YJ9D
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
OTHER PINK1 PINK1_TRICA 5YJ9D D6WMX4 166 570 570.0 ANP:601 ATPlike Inactive DFGin 9.5017 15.2831 ABAminus -117.37, -38.64 -95.18, 97.77 -99.2, 13.92 280.74, 77.89 -62.77, -17.79 in-in in 7.8359 Saltbr-in 2.5799 HRD-out -70.37, 137.63 -130.59, 22.41 in-in-out SNCiio in-out ActLoopNT-in 2.5791 ActLoopCT-out nonTYR APEdihe_aaiao APEdist_iiii APE10-dihe-na -154.61, -176.52 APE9-dihe-na -54.92, 113.48 APE8-dihe-in -53.26, 148.57 APE8-rot-na 309.64 APE67-dihe-out -106.62, -9.97 -172.9, 165.52 APE12-dist-in 7.9748 APE11-dist-in 11.272 APE10-dist-in 7.1591 APE9-dist-in 3.2168 S205D,S377D,T386E,T530E None MSE197,MSE198,MSE208,MSE214,MSE223,MSE288,MSE294,MSE328,MSE380,MSE389 XRAY 2.53 0.23 0.243 D 423.0 343.0 56 34 34 0 [[61, 504]] 1.0 5yj9 Tribolium castaneum OTHER_PINK1_TRICA PINK1 5.8e-86 294.6 5.0 367.0 363.0 358 359 360 362 364 196 217 221 334 336 335 337.0 410 392 387 386 385 384 383 382 381 295 Serine/threonine-protein kinase Pink1, mitochondrial