Ligand: PVT

Total number of chains: 4
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin None 2 50.0% 6YVSB
DFGin ABAminus 1 25.0% 6YVSA
None None 1 25.0% 6YVSC
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
TYR PTK2 FAK1_HUMAN 6YVSA Q05397 414 686 1052.0 PVT:701 Type1 Inactive DFGin 7.0374 16.1102 ABAminus -123.36, 1.14 -129.41, 122.1 -120.04, 23.57 289.1, 75.16 -54.09, -36.16 in-out in 8.8011 Saltbr-out 4.0416 HRD-in -69.73, -49.55 71.97, 3.79 out-in-none SNCoin in-none ActLoopNT-in 2.9237 ActLoopCT-none TYR APEdihe_niiai APEdist_aaai APE10-dihe-none 999.0, 152.96 APE9-dihe-in -82.83, 138.18 APE8-dihe-in -84.21, 64.83 APE8-rot-na 34.21 APE67-dihe-in -64.52, -14.48 -50.82, -42.85 APE12-dist-na 999.0 APE11-dist-na 999.0 APE10-dist-na 12.4595 APE9-dist-in 7.9098 None None None XRAY 1.81 0.193 0.215 A 282.0 260.0 13 29 16 13 [[422, 678]] 1.0 6yvs TYR_PTK2_HUMAN TYR 3.6e-93 317.6 1.0 260.0 260.0 563 564 565 567 569 454 471 475 543 545 544 546.0 604 592 587 586 585 584 583 582 581 500 Focal adhesion kinase 1
TYR PTK2 FAK1_HUMAN 6YVSB Q05397 415 686 1052.0 PVT:701 Type1 Inactive DFGin 6.5709 16.0404 None -126.79, -3.83 -122.97, 123.34 -125.84, 999.0 281.41, 69.18 999.0, 999.0 in-in in 7.981 Saltbr-in 2.8944 HRD-in -66.74, -51.12 77.94, -4.0 in-none-out SNCino none-out ActLoopNT-none 999.0 ActLoopCT-out TYR APEdihe_nniai APEdist_aaao APE10-dihe-none 999.0, 999.0 APE9-dihe-none 999.0, 132.44 APE8-dihe-in -83.24, 64.15 APE8-rot-na 28.78 APE67-dihe-in -64.0, -16.76 -48.41, -44.86 APE12-dist-na 999.0 APE11-dist-na 999.0 APE10-dist-na 999.0 APE9-dist-out 8.1895 None None None XRAY 1.81 0.193 0.215 B 282.0 254.0 18 29 11 18 [[422, 678]] 1.0 6yvs TYR_PTK2_HUMAN TYR 3.6e-93 317.6 1.0 260.0 260.0 563 564 565 567 569 454 471 475 543 545 544 546.0 604 592 587 586 585 584 583 582 581 500 Focal adhesion kinase 1
TYR PTK2 FAK1_HUMAN 6YVSD Q05397 412 686 1052.0 PVT:701 Type1 Inactive DFGin 7.1321 16.183 None -76.03, -175.56 -60.31, 138.69 -87.68, 999.0 305.08, 167.36 999.0, 999.0 in-in in 7.4899 Saltbr-in 2.7592 HRD-in -66.73, -51.22 77.37, -3.86 in-none-out SNCino none-out ActLoopNT-none 999.0 ActLoopCT-out TYR APEdihe_nniai APEdist_aaao APE10-dihe-none 999.0, 999.0 APE9-dihe-none 999.0, 133.69 APE8-dihe-in -83.36, 63.72 APE8-rot-na 28.67 APE67-dihe-in -66.21, -12.54 -49.68, -44.19 APE12-dist-na 999.0 APE11-dist-na 999.0 APE10-dist-na 999.0 APE9-dist-out 8.2983 None None None XRAY 1.81 0.193 0.215 D 282.0 257.0 18 29 11 18 [[422, 678]] 1.0 6yvs TYR_PTK2_HUMAN TYR 3.6e-93 317.6 1.0 260.0 260.0 563 564 565 567 569 454 471 475 543 545 544 546.0 604 592 587 586 585 584 583 582 581 500 Focal adhesion kinase 1
TYR PTK2 FAK1_HUMAN 6YVSC Q05397 414 686 1052.0 PVT:701 Type1 Inactive None 999.0 999.0 None -89.33, -115.17 -25.15, 999.0 999.0, 999.0 999.0, 999.0 999.0, 999.0 in-out in 7.5978 Saltbr-out 3.8974 HRD-in -66.68, -50.09 76.47, -4.19 out-none-out SNCono none-out ActLoopNT-none 999.0 ActLoopCT-out TYR APEdihe_nniai APEdist_aaao APE10-dihe-none 999.0, 999.0 APE9-dihe-none 999.0, 129.62 APE8-dihe-in -83.55, 64.26 APE8-rot-na 28.32 APE67-dihe-in -65.5, -13.99 -48.94, -44.15 APE12-dist-na 999.0 APE11-dist-na 999.0 APE10-dist-na 999.0 APE9-dist-out 8.2196 None None None XRAY 1.81 0.193 0.215 C 282.0 254.0 19 29 10 19 [[422, 678]] 1.0 6yvs TYR_PTK2_HUMAN TYR 3.6e-93 317.6 1.0 260.0 260.0 563 564 565 567 569 454 471 475 543 545 544 546.0 604 592 587 586 585 584 583 582 581 500 Focal adhesion kinase 1

Ligand: PVT

Total number of chains: 4
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin None 2 50.0% 6YVSB
DFGin ABAminus 1 25.0% 6YVSA
None None 1 25.0% 6YVSC
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
TYR PTK2 FAK1_HUMAN 6YVSA Q05397 414 686 1052.0 PVT:701 Type1 Inactive DFGin 7.0374 16.1102 ABAminus -123.36, 1.14 -129.41, 122.1 -120.04, 23.57 289.1, 75.16 -54.09, -36.16 in-out in 8.8011 Saltbr-out 4.0416 HRD-in -69.73, -49.55 71.97, 3.79 out-in-none SNCoin in-none ActLoopNT-in 2.9237 ActLoopCT-none TYR APEdihe_niiai APEdist_aaai APE10-dihe-none 999.0, 152.96 APE9-dihe-in -82.83, 138.18 APE8-dihe-in -84.21, 64.83 APE8-rot-na 34.21 APE67-dihe-in -64.52, -14.48 -50.82, -42.85 APE12-dist-na 999.0 APE11-dist-na 999.0 APE10-dist-na 12.4595 APE9-dist-in 7.9098 None None None XRAY 1.81 0.193 0.215 A 282.0 260.0 13 29 16 13 [[422, 678]] 1.0 6yvs Homo sapiens TYR_PTK2_HUMAN TYR 3.6e-93 317.6 1.0 260.0 260.0 563 564 565 567 569 454 471 475 543 545 544 546.0 604 592 587 586 585 584 583 582 581 500 Focal adhesion kinase 1
TYR PTK2 FAK1_HUMAN 6YVSB Q05397 415 686 1052.0 PVT:701 Type1 Inactive DFGin 6.5709 16.0404 None -126.79, -3.83 -122.97, 123.34 -125.84, 999.0 281.41, 69.18 999.0, 999.0 in-in in 7.981 Saltbr-in 2.8944 HRD-in -66.74, -51.12 77.94, -4.0 in-none-out SNCino none-out ActLoopNT-none 999.0 ActLoopCT-out TYR APEdihe_nniai APEdist_aaao APE10-dihe-none 999.0, 999.0 APE9-dihe-none 999.0, 132.44 APE8-dihe-in -83.24, 64.15 APE8-rot-na 28.78 APE67-dihe-in -64.0, -16.76 -48.41, -44.86 APE12-dist-na 999.0 APE11-dist-na 999.0 APE10-dist-na 999.0 APE9-dist-out 8.1895 None None None XRAY 1.81 0.193 0.215 B 282.0 254.0 18 29 11 18 [[422, 678]] 1.0 6yvs Homo sapiens TYR_PTK2_HUMAN TYR 3.6e-93 317.6 1.0 260.0 260.0 563 564 565 567 569 454 471 475 543 545 544 546.0 604 592 587 586 585 584 583 582 581 500 Focal adhesion kinase 1
TYR PTK2 FAK1_HUMAN 6YVSD Q05397 412 686 1052.0 PVT:701 Type1 Inactive DFGin 7.1321 16.183 None -76.03, -175.56 -60.31, 138.69 -87.68, 999.0 305.08, 167.36 999.0, 999.0 in-in in 7.4899 Saltbr-in 2.7592 HRD-in -66.73, -51.22 77.37, -3.86 in-none-out SNCino none-out ActLoopNT-none 999.0 ActLoopCT-out TYR APEdihe_nniai APEdist_aaao APE10-dihe-none 999.0, 999.0 APE9-dihe-none 999.0, 133.69 APE8-dihe-in -83.36, 63.72 APE8-rot-na 28.67 APE67-dihe-in -66.21, -12.54 -49.68, -44.19 APE12-dist-na 999.0 APE11-dist-na 999.0 APE10-dist-na 999.0 APE9-dist-out 8.2983 None None None XRAY 1.81 0.193 0.215 D 282.0 257.0 18 29 11 18 [[422, 678]] 1.0 6yvs Homo sapiens TYR_PTK2_HUMAN TYR 3.6e-93 317.6 1.0 260.0 260.0 563 564 565 567 569 454 471 475 543 545 544 546.0 604 592 587 586 585 584 583 582 581 500 Focal adhesion kinase 1
TYR PTK2 FAK1_HUMAN 6YVSC Q05397 414 686 1052.0 PVT:701 Type1 Inactive None 999.0 999.0 None -89.33, -115.17 -25.15, 999.0 999.0, 999.0 999.0, 999.0 999.0, 999.0 in-out in 7.5978 Saltbr-out 3.8974 HRD-in -66.68, -50.09 76.47, -4.19 out-none-out SNCono none-out ActLoopNT-none 999.0 ActLoopCT-out TYR APEdihe_nniai APEdist_aaao APE10-dihe-none 999.0, 999.0 APE9-dihe-none 999.0, 129.62 APE8-dihe-in -83.55, 64.26 APE8-rot-na 28.32 APE67-dihe-in -65.5, -13.99 -48.94, -44.15 APE12-dist-na 999.0 APE11-dist-na 999.0 APE10-dist-na 999.0 APE9-dist-out 8.2196 None None None XRAY 1.81 0.193 0.215 C 282.0 254.0 19 29 10 19 [[422, 678]] 1.0 6yvs Homo sapiens TYR_PTK2_HUMAN TYR 3.6e-93 317.6 1.0 260.0 260.0 563 564 565 567 569 454 471 475 543 545 544 546.0 604 592 587 586 585 584 583 582 581 500 Focal adhesion kinase 1

Ligand: PVT

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name