PDB: 4OGR — CMGC CDK9_HUMAN

Total number of chains: 3
Active chains: 3
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 3 100.0% 4OGRI
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CMGC CDK9 CDK9_HUMAN 4OGRA P50750 8 330 372.0 ADN:60401 Type1 Active DFGin 6.9587 14.852 BLAminus -145.48, 171.71 58.99, 73.11 -88.05, 19.07 282.19, 75.89 -59.04, -25.77 in-in in 8.622 Saltbr-in 3.2016 HRD-in -78.29, -48.1 62.83, 28.93 in-in-in SNCiii in-in ActLoopNT-in 2.8854 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -132.59, 171.14 APE9-dihe-na 70.34, 130.75 APE8-dihe-in -51.49, 135.3 APE8-rot-in 303.62 APE67-dihe-in -61.39, -34.94 -50.28, -42.94 APE12-dist-in 13.2451 APE11-dist-in 11.4816 APE10-dist-in 6.7057 APE9-dist-in 3.2055 None TPO186 TPO186 XRAY 3.0 0.206 0.232 A 332.0 315.0 8 32 32 0 [[19, 315]] 1.0 4ogr CMGC_CDK9_HUMAN CMGC 4.1e-80 275.1 1.0 301.0 301.0 166 167 168 170 172 48 66 70 146 148 147 149.0 211 198 193 192 191 190 189 188 187 104 Cyclin-dependent kinase 9
CMGC CDK9 CDK9_HUMAN 4OGRE P50750 8 330 372.0 ADN:60401 Type1 Active DFGin 7.086 14.7487 BLAminus -145.95, 172.29 59.47, 72.14 -89.89, 19.36 283.65, 75.49 -58.97, -26.2 in-in in 8.8012 Saltbr-in 2.9314 HRD-in -77.91, -48.96 62.4, 28.78 in-in-in SNCiii in-in ActLoopNT-in 2.8481 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -132.99, 169.74 APE9-dihe-na 65.95, 134.0 APE8-dihe-in -52.43, 138.08 APE8-rot-in 303.65 APE67-dihe-in -62.11, -36.08 -50.82, -43.72 APE12-dist-in 13.2144 APE11-dist-in 11.1773 APE10-dist-in 6.7991 APE9-dist-in 3.4289 None TPO186 TPO186 XRAY 3.0 0.206 0.232 E 332.0 311.0 12 32 32 0 [[19, 315]] 1.0 4ogr CMGC_CDK9_HUMAN CMGC 4.1e-80 275.1 1.0 301.0 301.0 166 167 168 170 172 48 66 70 146 148 147 149.0 211 198 193 192 191 190 189 188 187 104 Cyclin-dependent kinase 9
CMGC CDK9 CDK9_HUMAN 4OGRI P50750 8 330 372.0 ADN:60401 Type1 Active DFGin 7.0203 14.8566 BLAminus -146.32, 171.3 58.62, 73.81 -88.0, 20.33 283.45, 75.93 -58.21, -25.18 in-in in 8.7536 Saltbr-in 3.2525 HRD-in -77.88, -47.68 62.44, 29.24 in-in-in SNCiii in-in ActLoopNT-in 2.9367 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -131.71, 169.37 APE9-dihe-na 67.96, 131.32 APE8-dihe-in -52.01, 135.85 APE8-rot-in 303.33 APE67-dihe-in -60.26, -34.97 -51.39, -42.17 APE12-dist-in 13.226 APE11-dist-in 11.0359 APE10-dist-in 6.5244 APE9-dist-in 3.1268 None TPO186 TPO186 XRAY 3.0 0.206 0.232 I 332.0 319.0 4 32 32 0 [[19, 315]] 1.0 4ogr CMGC_CDK9_HUMAN CMGC 4.1e-80 275.1 1.0 301.0 301.0 166 167 168 170 172 48 66 70 146 148 147 149.0 211 198 193 192 191 190 189 188 187 104 Cyclin-dependent kinase 9

PDB: 4OGR — CMGC CDK9_HUMAN

Total number of chains: 3
Active chains: 3
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 3 100.0% 4OGRI
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CMGC CDK9 CDK9_HUMAN 4OGRA P50750 8 330 372.0 ADN:60401 Type1 Active DFGin 6.9587 14.852 BLAminus -145.48, 171.71 58.99, 73.11 -88.05, 19.07 282.19, 75.89 -59.04, -25.77 in-in in 8.622 Saltbr-in 3.2016 HRD-in -78.29, -48.1 62.83, 28.93 in-in-in SNCiii in-in ActLoopNT-in 2.8854 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -132.59, 171.14 APE9-dihe-na 70.34, 130.75 APE8-dihe-in -51.49, 135.3 APE8-rot-in 303.62 APE67-dihe-in -61.39, -34.94 -50.28, -42.94 APE12-dist-in 13.2451 APE11-dist-in 11.4816 APE10-dist-in 6.7057 APE9-dist-in 3.2055 None TPO186 TPO186 XRAY 3.0 0.206 0.232 A 332.0 315.0 8 32 32 0 [[19, 315]] 1.0 4ogr Homo sapiens CMGC_CDK9_HUMAN CMGC 4.1e-80 275.1 1.0 301.0 301.0 166 167 168 170 172 48 66 70 146 148 147 149.0 211 198 193 192 191 190 189 188 187 104 Cyclin-dependent kinase 9
CMGC CDK9 CDK9_HUMAN 4OGRE P50750 8 330 372.0 ADN:60401 Type1 Active DFGin 7.086 14.7487 BLAminus -145.95, 172.29 59.47, 72.14 -89.89, 19.36 283.65, 75.49 -58.97, -26.2 in-in in 8.8012 Saltbr-in 2.9314 HRD-in -77.91, -48.96 62.4, 28.78 in-in-in SNCiii in-in ActLoopNT-in 2.8481 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -132.99, 169.74 APE9-dihe-na 65.95, 134.0 APE8-dihe-in -52.43, 138.08 APE8-rot-in 303.65 APE67-dihe-in -62.11, -36.08 -50.82, -43.72 APE12-dist-in 13.2144 APE11-dist-in 11.1773 APE10-dist-in 6.7991 APE9-dist-in 3.4289 None TPO186 TPO186 XRAY 3.0 0.206 0.232 E 332.0 311.0 12 32 32 0 [[19, 315]] 1.0 4ogr Homo sapiens CMGC_CDK9_HUMAN CMGC 4.1e-80 275.1 1.0 301.0 301.0 166 167 168 170 172 48 66 70 146 148 147 149.0 211 198 193 192 191 190 189 188 187 104 Cyclin-dependent kinase 9
CMGC CDK9 CDK9_HUMAN 4OGRI P50750 8 330 372.0 ADN:60401 Type1 Active DFGin 7.0203 14.8566 BLAminus -146.32, 171.3 58.62, 73.81 -88.0, 20.33 283.45, 75.93 -58.21, -25.18 in-in in 8.7536 Saltbr-in 3.2525 HRD-in -77.88, -47.68 62.44, 29.24 in-in-in SNCiii in-in ActLoopNT-in 2.9367 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -131.71, 169.37 APE9-dihe-na 67.96, 131.32 APE8-dihe-in -52.01, 135.85 APE8-rot-in 303.33 APE67-dihe-in -60.26, -34.97 -51.39, -42.17 APE12-dist-in 13.226 APE11-dist-in 11.0359 APE10-dist-in 6.5244 APE9-dist-in 3.1268 None TPO186 TPO186 XRAY 3.0 0.206 0.232 I 332.0 319.0 4 32 32 0 [[19, 315]] 1.0 4ogr Homo sapiens CMGC_CDK9_HUMAN CMGC 4.1e-80 275.1 1.0 301.0 301.0 166 167 168 170 172 48 66 70 146 148 147 149.0 211 198 193 192 191 190 189 188 187 104 Cyclin-dependent kinase 9

PDB: 4OGR — CMGC CDK9_HUMAN

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name