TKL_LYK3 (LysM domain receptor-like kinase 3)

Total number of chains: 0
Active chains: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Gene PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name

TKL_LYK3 (LysM domain receptor-like kinase 3)

Total number of chains: 2
Active chains: 0
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLBtrans 2 100.0% 9GFZA
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
LYK3 LYK3_MEDTR 9GFZA Q6UD73 302 596 620.0 ANP:601 ATPlike Inactive DFGin 5.8955 16.3194 BLBtrans -112.0, 159.57 61.3, 42.0 -77.09, 135.77 153.85, 71.13 82.14, -2.66 out-out out 14.7946 Saltbr-out 16.343 HRD-in -69.33, -37.57 70.07, -2.36 out-out-out SNCooo out-out ActLoopNT-out 6.107 ActLoopCT-out nonTYR APEdihe_aaiii APEdist_oioi APE10-dihe-na -140.09, 130.62 APE9-dihe-na 119.67, 164.52 APE8-dihe-in -118.67, 135.65 APE8-rot-in 301.27 APE67-dihe-inflip 89.4, -18.92 -56.77, 138.93 APE12-dist-out 14.646 APE11-dist-in 13.0792 APE10-dist-out 9.1944 APE9-dist-in 4.3087 D459N None None XRAY 2.5 0.211 0.257 A 296.0 288.0 7 29 25 4 [[321, 594]] 1.0 9gfz Medicago truncatula TKL_LYK3_MEDTR TKL 3.5e-59 206.5 3.0 264.0 262.0 458 459 460 462 464 349 362 366 438 440 439 441.0 499 487 482 481 480 479 478 477 476 391 LysM domain receptor-like kinase 3
LYK3 LYK3_MEDTR 9GFZB Q6UD73 307 596 620.0 No_ligand No_ligand Inactive DFGin 5.3476 16.0055 BLBtrans -112.73, 162.21 57.4, 40.27 -71.39, 130.82 153.63, 65.55 78.53, 11.4 out-out out 15.0717 Saltbr-out 15.9631 HRD-in -69.69, -45.36 64.18, 14.01 out-out-out SNCooo out-out ActLoopNT-out 5.9889 ActLoopCT-out nonTYR APEdihe_aaiii APEdist_nnoi APE10-dihe-na 999.0, 130.31 APE9-dihe-na 110.53, 158.12 APE8-dihe-in -108.89, 135.92 APE8-rot-in 310.88 APE67-dihe-inflip 92.37, -16.37 -56.79, 133.79 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-out 9.152 APE9-dist-in 4.3458 D459N None None XRAY 2.5 0.211 0.257 B 296.0 281.0 9 29 23 6 [[321, 594]] 1.0 9gfz Medicago truncatula TKL_LYK3_MEDTR TKL 3.5e-59 206.5 3.0 264.0 262.0 458 459 460 462 464 349 362 366 438 440 439 441.0 499 487 482 481 480 479 478 477 476 391 LysM domain receptor-like kinase 3

TKL_LYK3 (LysM domain receptor-like kinase 3)

Total number of chains: 2
Active chains: 0
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLBtrans 2 100.0% 9GFZA
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
LYK3 LYK3_MEDTR 9GFZA Q6UD73 302 596 620.0 ANP:601 ATPlike Inactive DFGin 5.8955 16.3194 BLBtrans -112.0, 159.57 61.3, 42.0 -77.09, 135.77 153.85, 71.13 82.14, -2.66 out-out out 14.7946 Saltbr-out 16.343 HRD-in -69.33, -37.57 70.07, -2.36 out-out-out SNCooo out-out ActLoopNT-out 6.107 ActLoopCT-out nonTYR APEdihe_aaiii APEdist_oioi APE10-dihe-na -140.09, 130.62 APE9-dihe-na 119.67, 164.52 APE8-dihe-in -118.67, 135.65 APE8-rot-in 301.27 APE67-dihe-inflip 89.4, -18.92 -56.77, 138.93 APE12-dist-out 14.646 APE11-dist-in 13.0792 APE10-dist-out 9.1944 APE9-dist-in 4.3087 D459N None None XRAY 2.5 0.211 0.257 A 296.0 288.0 7 29 25 4 [[321, 594]] 1.0 9gfz Medicago truncatula TKL_LYK3_MEDTR TKL 3.5e-59 206.5 3.0 264.0 262.0 458 459 460 462 464 349 362 366 438 440 439 441.0 499 487 482 481 480 479 478 477 476 391 LysM domain receptor-like kinase 3
LYK3 LYK3_MEDTR 9GFZB Q6UD73 307 596 620.0 No_ligand No_ligand Inactive DFGin 5.3476 16.0055 BLBtrans -112.73, 162.21 57.4, 40.27 -71.39, 130.82 153.63, 65.55 78.53, 11.4 out-out out 15.0717 Saltbr-out 15.9631 HRD-in -69.69, -45.36 64.18, 14.01 out-out-out SNCooo out-out ActLoopNT-out 5.9889 ActLoopCT-out nonTYR APEdihe_aaiii APEdist_nnoi APE10-dihe-na 999.0, 130.31 APE9-dihe-na 110.53, 158.12 APE8-dihe-in -108.89, 135.92 APE8-rot-in 310.88 APE67-dihe-inflip 92.37, -16.37 -56.79, 133.79 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-out 9.152 APE9-dist-in 4.3458 D459N None None XRAY 2.5 0.211 0.257 B 296.0 281.0 9 29 23 6 [[321, 594]] 1.0 9gfz Medicago truncatula TKL_LYK3_MEDTR TKL 3.5e-59 206.5 3.0 264.0 262.0 458 459 460 462 464 349 362 366 438 440 439 441.0 499 487 482 481 480 479 478 477 476 391 LysM domain receptor-like kinase 3