PDB: 7NXJ — CMGC CDK13_HUMAN

Total number of chains: 2
Active chains: 1
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 100.0% 7NXJC
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CMGC CDK13 CDK13_HUMAN 7NXJA Q14004 695 1023 1512.0 5I1:2000 Type1 Inactive DFGin 7.1995 15.5827 BLAminus -134.09, -176.97 62.33, 67.41 -91.23, 15.9 287.67, 81.13 -61.73, -37.78 in-in in 8.4987 Saltbr-in 2.9633 HRD-in -79.65, -52.24 63.53, 20.59 in-in-out SNCiio in-out ActLoopNT-in 2.9932 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -114.51, -45.98 APE9-dihe-na -99.77, 146.08 APE8-dihe-in -57.95, 147.47 APE8-rot-out 187.04 APE67-dihe-in -68.92, -17.49 -56.75, -40.95 APE12-dist-in 13.5152 APE11-dist-in 11.7029 APE10-dist-in 7.3668 APE9-dist-in 3.798 None TPO871 TPO871 XRAY 2.36 0.213 0.252 A 347.0 325.0 4 29 29 0 [[705, 998]] 1.0 7nxj CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CMGC CDK13 CDK13_HUMAN 7NXJC Q14004 695 1017 1512.0 5I1:2000 Type1 Active DFGin 6.9616 15.6056 BLAminus -133.72, -176.86 62.66, 68.43 -91.28, 15.65 287.66, 80.69 -61.23, -36.99 in-in in 8.403 Saltbr-in 3.2991 HRD-in -78.08, -51.61 66.62, 18.24 in-in-in SNCiii in-in ActLoopNT-in 2.9184 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -116.98, -45.56 APE9-dihe-na -98.56, 148.39 APE8-dihe-in -56.05, 143.73 APE8-rot-in 289.62 APE67-dihe-in -68.25, -18.22 -57.66, -40.3 APE12-dist-in 13.4864 APE11-dist-in 11.4851 APE10-dist-in 7.2909 APE9-dist-in 3.5888 None TPO871 TPO871 XRAY 2.36 0.213 0.252 C 347.0 323.0 0 29 29 0 [[705, 998]] 1.0 7nxj CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13

PDB: 7NXJ — CMGC CDK13_HUMAN

Total number of chains: 2
Active chains: 1
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 100.0% 7NXJC
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CMGC CDK13 CDK13_HUMAN 7NXJA Q14004 695 1023 1512.0 5I1:2000 Type1 Inactive DFGin 7.1995 15.5827 BLAminus -134.09, -176.97 62.33, 67.41 -91.23, 15.9 287.67, 81.13 -61.73, -37.78 in-in in 8.4987 Saltbr-in 2.9633 HRD-in -79.65, -52.24 63.53, 20.59 in-in-out SNCiio in-out ActLoopNT-in 2.9932 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -114.51, -45.98 APE9-dihe-na -99.77, 146.08 APE8-dihe-in -57.95, 147.47 APE8-rot-out 187.04 APE67-dihe-in -68.92, -17.49 -56.75, -40.95 APE12-dist-in 13.5152 APE11-dist-in 11.7029 APE10-dist-in 7.3668 APE9-dist-in 3.798 None TPO871 TPO871 XRAY 2.36 0.213 0.252 A 347.0 325.0 4 29 29 0 [[705, 998]] 1.0 7nxj Homo sapiens CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CMGC CDK13 CDK13_HUMAN 7NXJC Q14004 695 1017 1512.0 5I1:2000 Type1 Active DFGin 6.9616 15.6056 BLAminus -133.72, -176.86 62.66, 68.43 -91.28, 15.65 287.66, 80.69 -61.23, -36.99 in-in in 8.403 Saltbr-in 3.2991 HRD-in -78.08, -51.61 66.62, 18.24 in-in-in SNCiii in-in ActLoopNT-in 2.9184 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -116.98, -45.56 APE9-dihe-na -98.56, 148.39 APE8-dihe-in -56.05, 143.73 APE8-rot-in 289.62 APE67-dihe-in -68.25, -18.22 -57.66, -40.3 APE12-dist-in 13.4864 APE11-dist-in 11.4851 APE10-dist-in 7.2909 APE9-dist-in 3.5888 None TPO871 TPO871 XRAY 2.36 0.213 0.252 C 347.0 323.0 0 29 29 0 [[705, 998]] 1.0 7nxj Homo sapiens CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13

PDB: 7NXJ — CMGC CDK13_HUMAN

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name