PDB: 5MJB — TYR EPHB1_HUMAN

Total number of chains: 2
Active chains: 1
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 100.0% 5MJBB
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
TYR EPHB1 EPHB1_HUMAN 5MJBB P54762 608 890 984.0 7O3:901 Type1 Active DFGin 6.0945 13.9285 BLAminus -144.01, -170.2 57.06, 72.11 -90.61, 7.86 298.99, 102.19 -51.34, -41.82 in-in in 7.9276 Saltbr-in 2.8313 HRD-in -77.06, -51.4 72.88, -5.4 in-in-in SNCiii in-in ActLoopNT-in 2.9434 ActLoopCT-in TYR APEdihe_iiiai APEdist_aaai APE10-dihe-in -64.28, 141.56 APE9-dihe-in -138.81, 153.61 APE8-dihe-in -82.83, 91.49 APE8-rot-na 25.93 APE67-dihe-in -72.9, -9.32 -44.37, -51.53 APE12-dist-na 15.1158 APE11-dist-na 11.3642 APE10-dist-na 10.9972 APE9-dist-in 6.3188 None PTR647,PTR778 PTR647,PTR778 XRAY 2.23 0.199 0.214 B 305.0 280.0 3 33 30 3 [[619, 880]] 1.0 5mjb TYR_EPHB1_HUMAN TYR 8.1e-108 365.6 2.0 261.0 260.0 761 762 763 765 767 651 668 672 741 743 742 744.0 806 794 789 788 787 786 785 784 783 698 Ephrin type-B receptor 1
TYR EPHB1 EPHB1_HUMAN 5MJBA P54762 608 891 984.0 7O3:901 Type1.5_Back Inactive DFGin 6.0019 13.7853 BLAminus -133.67, -168.42 59.63, 70.74 -90.66, 8.06 299.37, 101.12 -49.79, -42.85 in-in in 7.9171 Saltbr-in 2.8126 HRD-in -76.18, -50.21 70.23, -5.93 in-in-out SNCiio in-out ActLoopNT-in 2.9333 ActLoopCT-out TYR APEdihe_oiiai APEdist_aaai APE10-dihe-out -109.93, -30.04 APE9-dihe-in -66.85, 139.16 APE8-dihe-in -90.86, 97.78 APE8-rot-na 25.99 APE67-dihe-in -71.64, -10.32 -44.79, -51.82 APE12-dist-na 12.1701 APE11-dist-na 12.3619 APE10-dist-na 7.7046 APE9-dist-in 5.5946 None PTR647,PTR778 PTR647,PTR778 XRAY 2.23 0.199 0.214 A 305.0 278.0 6 33 27 6 [[619, 880]] 1.0 5mjb TYR_EPHB1_HUMAN TYR 8.1e-108 365.6 2.0 261.0 260.0 761 762 763 765 767 651 668 672 741 743 742 744.0 806 794 789 788 787 786 785 784 783 698 Ephrin type-B receptor 1

PDB: 5MJB — TYR EPHB1_HUMAN

Total number of chains: 2
Active chains: 1
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 100.0% 5MJBB
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
TYR EPHB1 EPHB1_HUMAN 5MJBB P54762 608 890 984.0 7O3:901 Type1 Active DFGin 6.0945 13.9285 BLAminus -144.01, -170.2 57.06, 72.11 -90.61, 7.86 298.99, 102.19 -51.34, -41.82 in-in in 7.9276 Saltbr-in 2.8313 HRD-in -77.06, -51.4 72.88, -5.4 in-in-in SNCiii in-in ActLoopNT-in 2.9434 ActLoopCT-in TYR APEdihe_iiiai APEdist_aaai APE10-dihe-in -64.28, 141.56 APE9-dihe-in -138.81, 153.61 APE8-dihe-in -82.83, 91.49 APE8-rot-na 25.93 APE67-dihe-in -72.9, -9.32 -44.37, -51.53 APE12-dist-na 15.1158 APE11-dist-na 11.3642 APE10-dist-na 10.9972 APE9-dist-in 6.3188 None PTR647,PTR778 PTR647,PTR778 XRAY 2.23 0.199 0.214 B 305.0 280.0 3 33 30 3 [[619, 880]] 1.0 5mjb Homo sapiens TYR_EPHB1_HUMAN TYR 8.1e-108 365.6 2.0 261.0 260.0 761 762 763 765 767 651 668 672 741 743 742 744.0 806 794 789 788 787 786 785 784 783 698 Ephrin type-B receptor 1
TYR EPHB1 EPHB1_HUMAN 5MJBA P54762 608 891 984.0 7O3:901 Type1.5_Back Inactive DFGin 6.0019 13.7853 BLAminus -133.67, -168.42 59.63, 70.74 -90.66, 8.06 299.37, 101.12 -49.79, -42.85 in-in in 7.9171 Saltbr-in 2.8126 HRD-in -76.18, -50.21 70.23, -5.93 in-in-out SNCiio in-out ActLoopNT-in 2.9333 ActLoopCT-out TYR APEdihe_oiiai APEdist_aaai APE10-dihe-out -109.93, -30.04 APE9-dihe-in -66.85, 139.16 APE8-dihe-in -90.86, 97.78 APE8-rot-na 25.99 APE67-dihe-in -71.64, -10.32 -44.79, -51.82 APE12-dist-na 12.1701 APE11-dist-na 12.3619 APE10-dist-na 7.7046 APE9-dist-in 5.5946 None PTR647,PTR778 PTR647,PTR778 XRAY 2.23 0.199 0.214 A 305.0 278.0 6 33 27 6 [[619, 880]] 1.0 5mjb Homo sapiens TYR_EPHB1_HUMAN TYR 8.1e-108 365.6 2.0 261.0 260.0 761 762 763 765 767 651 668 672 741 743 742 744.0 806 794 789 788 787 786 785 784 783 698 Ephrin type-B receptor 1

PDB: 5MJB — TYR EPHB1_HUMAN

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name