PDB: 5EFQ — CMGC CDK13_HUMAN

Total number of chains: 2
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 100.0% 5EFQA
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CMGC CDK13 CDK13_HUMAN 5EFQA Q14004 695 1025 1512.0 ADP:1101 ATPlike Inactive DFGin 6.755 15.5888 BLAminus -141.88, 177.76 70.28, 48.66 -74.58, 17.49 278.28, 85.63 -61.09, -20.11 in-in in 8.1158 Saltbr-in 2.8139 HRD-in -86.6, -50.11 69.54, 11.28 in-in-out SNCiio in-out ActLoopNT-in 3.1368 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -127.03, -45.46 APE9-dihe-na -90.96, 147.77 APE8-dihe-in -58.82, 149.25 APE8-rot-out 183.76 APE67-dihe-in -63.13, -14.28 -57.08, -47.49 APE12-dist-in 13.2718 APE11-dist-in 11.1213 APE10-dist-in 6.9543 APE9-dist-in 3.3531 None TPO871 TPO871 XRAY 2.0 0.197 0.247 A 347.0 322.0 9 29 29 0 [[705, 998]] 1.0 5efq CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CMGC CDK13 CDK13_HUMAN 5EFQC Q14004 697 1031 1512.0 ADP:1101 ATPlike Inactive DFGin 6.6712 15.3958 BLAminus -141.53, 176.29 69.41, 51.5 -75.76, 17.57 280.54, 75.34 -60.62, -20.31 in-in in 8.1091 Saltbr-in 2.9445 HRD-in -87.13, -51.3 69.73, 13.1 in-in-out SNCiio in-out ActLoopNT-in 2.9383 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -124.45, -44.56 APE9-dihe-na -90.13, 148.33 APE8-dihe-in -57.19, 149.29 APE8-rot-out 181.48 APE67-dihe-in -63.2, -13.36 -56.43, -47.06 APE12-dist-in 13.4042 APE11-dist-in 11.5865 APE10-dist-in 7.0785 APE9-dist-in 3.3455 None TPO871 TPO871 XRAY 2.0 0.197 0.247 C 347.0 326.0 9 29 29 0 [[705, 998]] 1.0 5efq CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13

PDB: 5EFQ — CMGC CDK13_HUMAN

Total number of chains: 2
Active chains: 0
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 100.0% 5EFQA
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CMGC CDK13 CDK13_HUMAN 5EFQA Q14004 695 1025 1512.0 ADP:1101 ATPlike Inactive DFGin 6.755 15.5888 BLAminus -141.88, 177.76 70.28, 48.66 -74.58, 17.49 278.28, 85.63 -61.09, -20.11 in-in in 8.1158 Saltbr-in 2.8139 HRD-in -86.6, -50.11 69.54, 11.28 in-in-out SNCiio in-out ActLoopNT-in 3.1368 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -127.03, -45.46 APE9-dihe-na -90.96, 147.77 APE8-dihe-in -58.82, 149.25 APE8-rot-out 183.76 APE67-dihe-in -63.13, -14.28 -57.08, -47.49 APE12-dist-in 13.2718 APE11-dist-in 11.1213 APE10-dist-in 6.9543 APE9-dist-in 3.3531 None TPO871 TPO871 XRAY 2.0 0.197 0.247 A 347.0 322.0 9 29 29 0 [[705, 998]] 1.0 5efq Homo sapiens CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CMGC CDK13 CDK13_HUMAN 5EFQC Q14004 697 1031 1512.0 ADP:1101 ATPlike Inactive DFGin 6.6712 15.3958 BLAminus -141.53, 176.29 69.41, 51.5 -75.76, 17.57 280.54, 75.34 -60.62, -20.31 in-in in 8.1091 Saltbr-in 2.9445 HRD-in -87.13, -51.3 69.73, 13.1 in-in-out SNCiio in-out ActLoopNT-in 2.9383 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -124.45, -44.56 APE9-dihe-na -90.13, 148.33 APE8-dihe-in -57.19, 149.29 APE8-rot-out 181.48 APE67-dihe-in -63.2, -13.36 -56.43, -47.06 APE12-dist-in 13.4042 APE11-dist-in 11.5865 APE10-dist-in 7.0785 APE9-dist-in 3.3455 None TPO871 TPO871 XRAY 2.0 0.197 0.247 C 347.0 326.0 9 29 29 0 [[705, 998]] 1.0 5efq Homo sapiens CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13

PDB: 5EFQ — CMGC CDK13_HUMAN

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name