PDB: 2JD5 — CMGC SKY1_YEAST

Total number of chains: 0
Active chains: 0
Total number of genes: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name

PDB: 2JD5 — CMGC SKY1_YEAST

Total number of chains: 2
Active chains: 1
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 100.0% 2JD5B
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CMGC SKY1 SKY1_YEAST 2JD5A Q03656 144 738 742.0 No_ligand No_ligand Inactive DFGin 5.7555 12.6596 BLAminus -132.08, 174.8 65.32, 74.56 -89.83, 31.24 295.46, 16.82 -63.47, -11.87 in-in in 9.0296 Saltbr-in 3.3376 HRD-in -90.7, -35.84 66.49, -12.78 in-in-out SNCiio in-out ActLoopNT-in 2.9314 ActLoopCT-out nonTYR APEdihe_aaiio APEdist_iiii APE10-dihe-na -115.43, 167.61 APE9-dihe-na 63.37, 141.24 APE8-dihe-in -72.24, 121.64 APE8-rot-in 294.36 APE67-dihe-out -41.5, -41.41 32.67, -93.05 APE12-dist-in 12.4859 APE11-dist-in 10.1502 APE10-dist-in 7.6021 APE9-dist-in 2.9618 None None None XRAY 2.5 0.21 0.255 A 373.0 353.0 10 25 25 0 [[158, 706]] 1.0 2jd5 Saccharomyces cerevisiae CMGC_SKY1_YEAST CMGC 8.8e-100 339.7 1.0 301.0 301.0 549 550 551 553 555 187 202 206 291 293 292 294.0 586 574 569 568 567 566 565 564 563 247 Serine/threonine-protein kinase SKY1
CMGC SKY1 SKY1_YEAST 2JD5B Q03656 146 737 742.0 No_ligand No_ligand Active DFGin 5.765 13.1311 BLAminus -115.22, 170.4 53.62, 84.96 -89.1, 33.8 290.52, 8.39 -77.19, -13.53 in-in in 8.7961 Saltbr-in 3.0938 HRD-in -68.88, -49.52 75.62, -7.32 in-in-in SNCiii in-in ActLoopNT-in 2.8877 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -119.58, 171.0 APE9-dihe-na 63.55, 148.81 APE8-dihe-in -86.47, 140.77 APE8-rot-in 294.86 APE67-dihe-in -57.45, -24.12 -15.48, -79.97 APE12-dist-in 12.4222 APE11-dist-in 10.1852 APE10-dist-in 7.3743 APE9-dist-in 2.9551 None None None XRAY 2.5 0.21 0.255 B 373.0 360.0 0 25 25 0 [[158, 706]] 1.0 2jd5 Saccharomyces cerevisiae CMGC_SKY1_YEAST CMGC 8.8e-100 339.7 1.0 301.0 301.0 549 550 551 553 555 187 202 206 291 293 292 294.0 586 574 569 568 567 566 565 564 563 247 Serine/threonine-protein kinase SKY1

PDB: 2JD5 — CMGC SKY1_YEAST

Total number of chains: 2
Active chains: 1
Total number of genes: 1
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 100.0% 2JD5B
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Group Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CMGC SKY1 SKY1_YEAST 2JD5A Q03656 144 738 742.0 No_ligand No_ligand Inactive DFGin 5.7555 12.6596 BLAminus -132.08, 174.8 65.32, 74.56 -89.83, 31.24 295.46, 16.82 -63.47, -11.87 in-in in 9.0296 Saltbr-in 3.3376 HRD-in -90.7, -35.84 66.49, -12.78 in-in-out SNCiio in-out ActLoopNT-in 2.9314 ActLoopCT-out nonTYR APEdihe_aaiio APEdist_iiii APE10-dihe-na -115.43, 167.61 APE9-dihe-na 63.37, 141.24 APE8-dihe-in -72.24, 121.64 APE8-rot-in 294.36 APE67-dihe-out -41.5, -41.41 32.67, -93.05 APE12-dist-in 12.4859 APE11-dist-in 10.1502 APE10-dist-in 7.6021 APE9-dist-in 2.9618 None None None XRAY 2.5 0.21 0.255 A 373.0 353.0 10 25 25 0 [[158, 706]] 1.0 2jd5 Saccharomyces cerevisiae CMGC_SKY1_YEAST CMGC 8.8e-100 339.7 1.0 301.0 301.0 549 550 551 553 555 187 202 206 291 293 292 294.0 586 574 569 568 567 566 565 564 563 247 Serine/threonine-protein kinase SKY1
CMGC SKY1 SKY1_YEAST 2JD5B Q03656 146 737 742.0 No_ligand No_ligand Active DFGin 5.765 13.1311 BLAminus -115.22, 170.4 53.62, 84.96 -89.1, 33.8 290.52, 8.39 -77.19, -13.53 in-in in 8.7961 Saltbr-in 3.0938 HRD-in -68.88, -49.52 75.62, -7.32 in-in-in SNCiii in-in ActLoopNT-in 2.8877 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -119.58, 171.0 APE9-dihe-na 63.55, 148.81 APE8-dihe-in -86.47, 140.77 APE8-rot-in 294.86 APE67-dihe-in -57.45, -24.12 -15.48, -79.97 APE12-dist-in 12.4222 APE11-dist-in 10.1852 APE10-dist-in 7.3743 APE9-dist-in 2.9551 None None None XRAY 2.5 0.21 0.255 B 373.0 360.0 0 25 25 0 [[158, 706]] 1.0 2jd5 Saccharomyces cerevisiae CMGC_SKY1_YEAST CMGC 8.8e-100 339.7 1.0 301.0 301.0 549 550 551 553 555 187 202 206 291 293 292 294.0 586 574 569 568 567 566 565 564 563 247 Serine/threonine-protein kinase SKY1