CMGC_CDK (Cyclin-dependent kinase 2 homolog)

Total number of chains: 0
Active chains: 0
Spatial label Dihedral label Number of Chains Percent Representative
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Gene PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name

CMGC_CDK (Cyclin-dependent kinase 2 homolog)

Total number of chains: 4
Active chains: 0
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 50.0% 3NIZA
DFGin BLBminus 2 50.0% 3GC0A
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CDK Q5CRJ8_CRYPI 3NIZA Q5CRJ8 1 293 295.0 ADP:60314 ATPlike Inactive DFGin 6.414 14.9205 BLAminus -148.14, 171.85 62.34, 76.33 -90.55, 26.42 283.17, 83.82 -64.08, -27.13 in-in in 9.1988 Saltbr-in 3.0509 HRD-in -69.04, -53.75 72.92, -5.13 in-in-out SNCiio in-out ActLoopNT-in 2.9042 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iioo APE10-dihe-na -75.55, 106.41 APE9-dihe-na -120.78, 159.03 APE8-dihe-in -63.65, 138.42 APE8-rot-out 189.36 APE67-dihe-in -64.68, -19.03 -103.04, 13.52 APE12-dist-in 10.7004 APE11-dist-in 9.7673 APE10-dist-out 13.8921 APE9-dist-out 9.5481 None None None XRAY 2.4 0.223 0.256 A 311.0 284.0 9 28 25 3 [[5, 286]] 1.0 3niz Cryptosporidium parvum CMGC_CDK_CRYPI CMGC 1.9e-86 296.3 1.0 301.0 301.0 143 144 145 147 149 33 51 55 123 125 124 126.0 184 171 166 165 164 163 162 161 160 81 Cyclin-dependent kinase 2 homolog
CDK Q5CRJ8_CRYPI 2QKRA Q5CRJ8 1 292 295.0 IXM:60401 Type1 Inactive DFGin 6.6212 14.7365 BLAminus -133.47, 172.81 63.79, 77.2 -96.93, 30.82 288.17, 71.51 -60.97, -32.31 in-out in 8.5876 Saltbr-out 3.9198 HRD-in -59.06, -56.53 73.7, 2.23 out-in-out SNCoio in-out ActLoopNT-in 2.864 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_nnoo APE10-dihe-na 999.0, -83.09 APE9-dihe-na -84.43, 156.86 APE8-dihe-in -75.58, 135.32 APE8-rot-out 188.18 APE67-dihe-in -71.78, -17.91 -96.84, 13.2 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-out 11.5503 APE9-dist-out 9.5403 None None None XRAY 2.6 0.249 0.3 A 313.0 269.0 23 28 23 5 [[5, 286]] 1.0 2qkr Cryptosporidium parvum CMGC_CDK_CRYPI CMGC 2e-86 296.2 1.0 301.0 301.0 143 144 145 147 149 33 51 55 123 125 124 126.0 184 171 166 165 164 163 162 161 160 81 Cyclin-dependent kinase 2 homolog
CDK A8BZ95_GIAIC 3GC0A A8BZ95 11 308 308.0 AMP:309 ATPlike Inactive DFGin 10.7338 18.1232 BLBminus -99.74, 152.92 74.37, 22.26 -55.88, 137.45 246.69, 94.2 78.53, -11.24 out-none out 15.2348 Saltbr-none 999.0 HRD-in -87.56, -59.97 77.29, -14.0 none-out-out SNCnoo out-out ActLoopNT-out 5.9558 ActLoopCT-out nonTYR APEdihe_aaoni APEdist_nooo APE10-dihe-na -74.71, -16.76 APE9-dihe-na -60.85, -32.02 APE8-dihe-out -56.57, -42.85 APE8-rot-none 999.0 APE67-dihe-in -62.9, -23.58 -58.04, -33.64 APE12-dist-none 999.0 APE11-dist-out 17.4693 APE10-dist-out 21.3274 APE9-dist-out 11.763 None None None XRAY 2.0 0.199 0.265 A 329.0 278.0 20 28 19 9 [[15, 301]] 1.0 3gc0 Giardia intestinalis CMGC_CDK_GIAIC CMGC 1.5e-81 280.1 1.0 301.0 301.0 158 159 160 162 164 44 62 66 133 135 134 136.0 199 186 181 180 179 178 177 176 175 92 cyclin-dependent kinase
CDK A8BZ95_GIAIC 3GBZA A8BZ95 11 308 308.0 No_ligand No_ligand Inactive DFGin 10.7389 17.9776 BLBminus -99.1, 151.35 81.29, 18.39 -57.55, 138.28 248.44, 96.7 80.67, -13.37 out-none out 15.1715 Saltbr-none 999.0 HRD-in -87.01, -61.36 83.27, -16.53 none-out-none SNCnon out-none ActLoopNT-out 5.9186 ActLoopCT-none nonTYR APEdihe_aanni APEdist_nnnn APE10-dihe-na 999.0, 999.0 APE9-dihe-na 999.0, 999.0 APE8-dihe-none 999.0, 134.75 APE8-rot-none 999.0 APE67-dihe-in -64.01, -24.12 -92.5, 0.69 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-none 999.0 APE9-dist-none 999.0 None None None XRAY 1.85 0.186 0.236 A 329.0 274.0 24 28 17 11 [[15, 301]] 1.0 3gbz Giardia intestinalis CMGC_CDK_GIAIC CMGC 1.5e-81 280.1 1.0 301.0 301.0 158 159 160 162 164 44 62 66 133 135 134 136.0 199 186 181 180 179 178 177 176 175 92 cyclin-dependent kinase

CMGC_CDK (Cyclin-dependent kinase 2 homolog)

Total number of chains: 4
Active chains: 0
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 2 50.0% 3NIZA
DFGin BLBminus 2 50.0% 3GC0A
All chains
Pymol session (all) Pymol script (all)
Representatives
Pymol session (repr) Pymol script (repr)
All chains - renumbered by
Uniprot PDB Alignment
Hover over column headers for tooltip help.

Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ		 DFG-Asp
φ,ψ		 DFG-Phe
φ,ψ		 DFG-Phe
χ1,χ2		 DFG-Gly
φ,ψ		 ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CDK Q5CRJ8_CRYPI 3NIZA Q5CRJ8 1 293 295.0 ADP:60314 ATPlike Inactive DFGin 6.414 14.9205 BLAminus -148.14, 171.85 62.34, 76.33 -90.55, 26.42 283.17, 83.82 -64.08, -27.13 in-in in 9.1988 Saltbr-in 3.0509 HRD-in -69.04, -53.75 72.92, -5.13 in-in-out SNCiio in-out ActLoopNT-in 2.9042 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iioo APE10-dihe-na -75.55, 106.41 APE9-dihe-na -120.78, 159.03 APE8-dihe-in -63.65, 138.42 APE8-rot-out 189.36 APE67-dihe-in -64.68, -19.03 -103.04, 13.52 APE12-dist-in 10.7004 APE11-dist-in 9.7673 APE10-dist-out 13.8921 APE9-dist-out 9.5481 None None None XRAY 2.4 0.223 0.256 A 311.0 284.0 9 28 25 3 [[5, 286]] 1.0 3niz Cryptosporidium parvum CMGC_CDK_CRYPI CMGC 1.9e-86 296.3 1.0 301.0 301.0 143 144 145 147 149 33 51 55 123 125 124 126.0 184 171 166 165 164 163 162 161 160 81 Cyclin-dependent kinase 2 homolog
CDK Q5CRJ8_CRYPI 2QKRA Q5CRJ8 1 292 295.0 IXM:60401 Type1 Inactive DFGin 6.6212 14.7365 BLAminus -133.47, 172.81 63.79, 77.2 -96.93, 30.82 288.17, 71.51 -60.97, -32.31 in-out in 8.5876 Saltbr-out 3.9198 HRD-in -59.06, -56.53 73.7, 2.23 out-in-out SNCoio in-out ActLoopNT-in 2.864 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_nnoo APE10-dihe-na 999.0, -83.09 APE9-dihe-na -84.43, 156.86 APE8-dihe-in -75.58, 135.32 APE8-rot-out 188.18 APE67-dihe-in -71.78, -17.91 -96.84, 13.2 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-out 11.5503 APE9-dist-out 9.5403 None None None XRAY 2.6 0.249 0.3 A 313.0 269.0 23 28 23 5 [[5, 286]] 1.0 2qkr Cryptosporidium parvum CMGC_CDK_CRYPI CMGC 2e-86 296.2 1.0 301.0 301.0 143 144 145 147 149 33 51 55 123 125 124 126.0 184 171 166 165 164 163 162 161 160 81 Cyclin-dependent kinase 2 homolog
CDK A8BZ95_GIAIC 3GC0A A8BZ95 11 308 308.0 AMP:309 ATPlike Inactive DFGin 10.7338 18.1232 BLBminus -99.74, 152.92 74.37, 22.26 -55.88, 137.45 246.69, 94.2 78.53, -11.24 out-none out 15.2348 Saltbr-none 999.0 HRD-in -87.56, -59.97 77.29, -14.0 none-out-out SNCnoo out-out ActLoopNT-out 5.9558 ActLoopCT-out nonTYR APEdihe_aaoni APEdist_nooo APE10-dihe-na -74.71, -16.76 APE9-dihe-na -60.85, -32.02 APE8-dihe-out -56.57, -42.85 APE8-rot-none 999.0 APE67-dihe-in -62.9, -23.58 -58.04, -33.64 APE12-dist-none 999.0 APE11-dist-out 17.4693 APE10-dist-out 21.3274 APE9-dist-out 11.763 None None None XRAY 2.0 0.199 0.265 A 329.0 278.0 20 28 19 9 [[15, 301]] 1.0 3gc0 Giardia intestinalis CMGC_CDK_GIAIC CMGC 1.5e-81 280.1 1.0 301.0 301.0 158 159 160 162 164 44 62 66 133 135 134 136.0 199 186 181 180 179 178 177 176 175 92 cyclin-dependent kinase
CDK A8BZ95_GIAIC 3GBZA A8BZ95 11 308 308.0 No_ligand No_ligand Inactive DFGin 10.7389 17.9776 BLBminus -99.1, 151.35 81.29, 18.39 -57.55, 138.28 248.44, 96.7 80.67, -13.37 out-none out 15.1715 Saltbr-none 999.0 HRD-in -87.01, -61.36 83.27, -16.53 none-out-none SNCnon out-none ActLoopNT-out 5.9186 ActLoopCT-none nonTYR APEdihe_aanni APEdist_nnnn APE10-dihe-na 999.0, 999.0 APE9-dihe-na 999.0, 999.0 APE8-dihe-none 999.0, 134.75 APE8-rot-none 999.0 APE67-dihe-in -64.01, -24.12 -92.5, 0.69 APE12-dist-none 999.0 APE11-dist-none 999.0 APE10-dist-none 999.0 APE9-dist-none 999.0 None None None XRAY 1.85 0.186 0.236 A 329.0 274.0 24 28 17 11 [[15, 301]] 1.0 3gbz Giardia intestinalis CMGC_CDK_GIAIC CMGC 1.5e-81 280.1 1.0 301.0 301.0 158 159 160 162 164 44 62 66 133 135 134 136.0 199 186 181 180 179 178 177 176 175 92 cyclin-dependent kinase