CMGC_CDK13 (Cyclin-dependent kinase 13)

Total number of chains: 6
Active chains: 3
Uniprot: CDK13_HUMAN
Kinase Domain Residues: 705 - 998
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 6 100.0% AF-Q14004-K1A

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Gene PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ
DFG-Asp
φ,ψ
DFG-Phe
φ,ψ
DFG-Phe
χ1,χ2
DFG-Gly
φ,ψ
ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CDK13 AF-Q14004-K1A Q14004 697 1006 1512.0 No_ligand No_ligand Active DFGin 6.733 15.1013 BLAminus -133.85, 174.95 58.79, 70.48 -83.2, 17.64 283.83, 73.08 -59.83, -32.7 in-in in 8.6108 Saltbr-in 2.7496 HRD-in -75.29, -48.73 63.6, 12.33 in-in-in SNCiii in-in ActLoopNT-in 2.8983 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -124.12, 171.2 APE9-dihe-na 62.22, 132.61 APE8-dihe-in -56.89, 135.65 APE8-rot-in 300.03 APE67-dihe-in -66.93, -23.69 -49.12, -40.94 APE12-dist-in 13.1391 APE11-dist-in 11.1408 APE10-dist-in 6.6805 APE9-dist-in 3.2929 None None None AF2 -1.0 1.0 1.0 A 310.0 310.0 0 29 29 0 [[705, 998]] 1.0 AF-Q14004-K1 CMGC_CDK13_HUMAN CMGC 1.4e-85 293.0 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CDK13 AF-Q14004-K3A Q14004 697 1006 1512.0 No_ligand No_ligand Active DFGin 7.0412 14.6322 BLAminus -137.73, -179.63 58.96, 61.27 -76.86, 21.5 284.17, 76.14 -63.09, -27.83 in-in in 8.592 Saltbr-in 2.7299 HRD-in -79.66, -49.7 63.38, 21.27 in-in-in SNCiii in-in ActLoopNT-in 2.8949 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -124.96, 171.3 APE9-dihe-na 61.14, 129.16 APE8-dihe-in -55.19, 137.57 APE8-rot-in 296.3 APE67-dihe-in -65.38, -25.93 -48.74, -44.02 APE12-dist-in 12.8344 APE11-dist-in 10.7035 APE10-dist-in 6.4126 APE9-dist-in 3.3406 None None None AF2 -1.0 1.0 1.0 A 310.0 310.0 0 29 29 0 [[705, 998]] 1.0 AF-Q14004-K3 CMGC_CDK13_HUMAN CMGC 1.4e-85 293.0 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CDK13 7NXJC Q14004 695 1017 1512.0 5I1:2000 Type1 Active DFGin 6.9616 15.6056 BLAminus -133.72, -176.86 62.66, 68.43 -91.28, 15.65 287.66, 80.69 -61.23, -36.99 in-in in 8.403 Saltbr-in 3.2991 HRD-in -78.08, -51.61 66.62, 18.24 in-in-in SNCiii in-in ActLoopNT-in 2.9184 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -116.98, -45.56 APE9-dihe-na -98.56, 148.39 APE8-dihe-in -56.05, 143.73 APE8-rot-in 289.62 APE67-dihe-in -68.25, -18.22 -57.66, -40.3 APE12-dist-in 13.4864 APE11-dist-in 11.4851 APE10-dist-in 7.2909 APE9-dist-in 3.5888 None TPO871 TPO871 XRAY 2.36 0.213 0.252 C 347.0 323.0 0 29 29 0 [[705, 998]] 1.0 7nxj CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CDK13 5EFQA Q14004 695 1025 1512.0 ADP:1101 ATPlike Inactive DFGin 6.755 15.5888 BLAminus -141.88, 177.76 70.28, 48.66 -74.58, 17.49 278.28, 85.63 -61.09, -20.11 in-in in 8.1158 Saltbr-in 2.8139 HRD-in -86.6, -50.11 69.54, 11.28 in-in-out SNCiio in-out ActLoopNT-in 3.1368 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -127.03, -45.46 APE9-dihe-na -90.96, 147.77 APE8-dihe-in -58.82, 149.25 APE8-rot-out 183.76 APE67-dihe-in -63.13, -14.28 -57.08, -47.49 APE12-dist-in 13.2718 APE11-dist-in 11.1213 APE10-dist-in 6.9543 APE9-dist-in 3.3531 None TPO871 TPO871 XRAY 2.0 0.197 0.247 A 347.0 322.0 9 29 29 0 [[705, 998]] 1.0 5efq CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CDK13 5EFQC Q14004 697 1031 1512.0 ADP:1101 ATPlike Inactive DFGin 6.6712 15.3958 BLAminus -141.53, 176.29 69.41, 51.5 -75.76, 17.57 280.54, 75.34 -60.62, -20.31 in-in in 8.1091 Saltbr-in 2.9445 HRD-in -87.13, -51.3 69.73, 13.1 in-in-out SNCiio in-out ActLoopNT-in 2.9383 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -124.45, -44.56 APE9-dihe-na -90.13, 148.33 APE8-dihe-in -57.19, 149.29 APE8-rot-out 181.48 APE67-dihe-in -63.2, -13.36 -56.43, -47.06 APE12-dist-in 13.4042 APE11-dist-in 11.5865 APE10-dist-in 7.0785 APE9-dist-in 3.3455 None TPO871 TPO871 XRAY 2.0 0.197 0.247 C 347.0 326.0 9 29 29 0 [[705, 998]] 1.0 5efq CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CDK13 7NXJA Q14004 695 1023 1512.0 5I1:2000 Type1 Inactive DFGin 7.1995 15.5827 BLAminus -134.09, -176.97 62.33, 67.41 -91.23, 15.9 287.67, 81.13 -61.73, -37.78 in-in in 8.4987 Saltbr-in 2.9633 HRD-in -79.65, -52.24 63.53, 20.59 in-in-out SNCiio in-out ActLoopNT-in 2.9932 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -114.51, -45.98 APE9-dihe-na -99.77, 146.08 APE8-dihe-in -57.95, 147.47 APE8-rot-out 187.04 APE67-dihe-in -68.92, -17.49 -56.75, -40.95 APE12-dist-in 13.5152 APE11-dist-in 11.7029 APE10-dist-in 7.3668 APE9-dist-in 3.798 None TPO871 TPO871 XRAY 2.36 0.213 0.252 A 347.0 325.0 4 29 29 0 [[705, 998]] 1.0 7nxj CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13

CMGC_CDK13 (Cyclin-dependent kinase 13)

Total number of chains: 6
Active chains: 3
Spatial label Dihedral label Number of Chains Percent Representative
DFGin BLAminus 6 100.0% AF-Q14004-K1A

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Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ
DFG-Asp
φ,ψ
DFG-Phe
φ,ψ
DFG-Phe
χ1,χ2
DFG-Gly
φ,ψ
ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name
CDK13 CDK13_HUMAN AF-Q14004-K1A Q14004 697 1006 1512.0 No_ligand No_ligand Active DFGin 6.733 15.1013 BLAminus -133.85, 174.95 58.79, 70.48 -83.2, 17.64 283.83, 73.08 -59.83, -32.7 in-in in 8.6108 Saltbr-in 2.7496 HRD-in -75.29, -48.73 63.6, 12.33 in-in-in SNCiii in-in ActLoopNT-in 2.8983 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -124.12, 171.2 APE9-dihe-na 62.22, 132.61 APE8-dihe-in -56.89, 135.65 APE8-rot-in 300.03 APE67-dihe-in -66.93, -23.69 -49.12, -40.94 APE12-dist-in 13.1391 APE11-dist-in 11.1408 APE10-dist-in 6.6805 APE9-dist-in 3.2929 None None None AF2 -1.0 1.0 1.0 A 310.0 310.0 0 29 29 0 [[705, 998]] 1.0 AF-Q14004-K1 Homo sapiens CMGC_CDK13_HUMAN CMGC 1.4e-85 293.0 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CDK13 CDK13_HUMAN AF-Q14004-K3A Q14004 697 1006 1512.0 No_ligand No_ligand Active DFGin 7.0412 14.6322 BLAminus -137.73, -179.63 58.96, 61.27 -76.86, 21.5 284.17, 76.14 -63.09, -27.83 in-in in 8.592 Saltbr-in 2.7299 HRD-in -79.66, -49.7 63.38, 21.27 in-in-in SNCiii in-in ActLoopNT-in 2.8949 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -124.96, 171.3 APE9-dihe-na 61.14, 129.16 APE8-dihe-in -55.19, 137.57 APE8-rot-in 296.3 APE67-dihe-in -65.38, -25.93 -48.74, -44.02 APE12-dist-in 12.8344 APE11-dist-in 10.7035 APE10-dist-in 6.4126 APE9-dist-in 3.3406 None None None AF2 -1.0 1.0 1.0 A 310.0 310.0 0 29 29 0 [[705, 998]] 1.0 AF-Q14004-K3 Homo sapiens CMGC_CDK13_HUMAN CMGC 1.4e-85 293.0 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CDK13 CDK13_HUMAN 7NXJC Q14004 695 1017 1512.0 5I1:2000 Type1 Active DFGin 6.9616 15.6056 BLAminus -133.72, -176.86 62.66, 68.43 -91.28, 15.65 287.66, 80.69 -61.23, -36.99 in-in in 8.403 Saltbr-in 3.2991 HRD-in -78.08, -51.61 66.62, 18.24 in-in-in SNCiii in-in ActLoopNT-in 2.9184 ActLoopCT-in nonTYR APEdihe_aaiii APEdist_iiii APE10-dihe-na -116.98, -45.56 APE9-dihe-na -98.56, 148.39 APE8-dihe-in -56.05, 143.73 APE8-rot-in 289.62 APE67-dihe-in -68.25, -18.22 -57.66, -40.3 APE12-dist-in 13.4864 APE11-dist-in 11.4851 APE10-dist-in 7.2909 APE9-dist-in 3.5888 None TPO871 TPO871 XRAY 2.36 0.213 0.252 C 347.0 323.0 0 29 29 0 [[705, 998]] 1.0 7nxj Homo sapiens CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CDK13 CDK13_HUMAN 5EFQA Q14004 695 1025 1512.0 ADP:1101 ATPlike Inactive DFGin 6.755 15.5888 BLAminus -141.88, 177.76 70.28, 48.66 -74.58, 17.49 278.28, 85.63 -61.09, -20.11 in-in in 8.1158 Saltbr-in 2.8139 HRD-in -86.6, -50.11 69.54, 11.28 in-in-out SNCiio in-out ActLoopNT-in 3.1368 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -127.03, -45.46 APE9-dihe-na -90.96, 147.77 APE8-dihe-in -58.82, 149.25 APE8-rot-out 183.76 APE67-dihe-in -63.13, -14.28 -57.08, -47.49 APE12-dist-in 13.2718 APE11-dist-in 11.1213 APE10-dist-in 6.9543 APE9-dist-in 3.3531 None TPO871 TPO871 XRAY 2.0 0.197 0.247 A 347.0 322.0 9 29 29 0 [[705, 998]] 1.0 5efq Homo sapiens CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CDK13 CDK13_HUMAN 5EFQC Q14004 697 1031 1512.0 ADP:1101 ATPlike Inactive DFGin 6.6712 15.3958 BLAminus -141.53, 176.29 69.41, 51.5 -75.76, 17.57 280.54, 75.34 -60.62, -20.31 in-in in 8.1091 Saltbr-in 2.9445 HRD-in -87.13, -51.3 69.73, 13.1 in-in-out SNCiio in-out ActLoopNT-in 2.9383 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -124.45, -44.56 APE9-dihe-na -90.13, 148.33 APE8-dihe-in -57.19, 149.29 APE8-rot-out 181.48 APE67-dihe-in -63.2, -13.36 -56.43, -47.06 APE12-dist-in 13.4042 APE11-dist-in 11.5865 APE10-dist-in 7.0785 APE9-dist-in 3.3455 None TPO871 TPO871 XRAY 2.0 0.197 0.247 C 347.0 326.0 9 29 29 0 [[705, 998]] 1.0 5efq Homo sapiens CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13
CDK13 CDK13_HUMAN 7NXJA Q14004 695 1023 1512.0 5I1:2000 Type1 Inactive DFGin 7.1995 15.5827 BLAminus -134.09, -176.97 62.33, 67.41 -91.23, 15.9 287.67, 81.13 -61.73, -37.78 in-in in 8.4987 Saltbr-in 2.9633 HRD-in -79.65, -52.24 63.53, 20.59 in-in-out SNCiio in-out ActLoopNT-in 2.9932 ActLoopCT-out nonTYR APEdihe_aaioi APEdist_iiii APE10-dihe-na -114.51, -45.98 APE9-dihe-na -99.77, 146.08 APE8-dihe-in -57.95, 147.47 APE8-rot-out 187.04 APE67-dihe-in -68.92, -17.49 -56.75, -40.95 APE12-dist-in 13.5152 APE11-dist-in 11.7029 APE10-dist-in 7.3668 APE9-dist-in 3.798 None TPO871 TPO871 XRAY 2.36 0.213 0.252 A 347.0 325.0 4 29 29 0 [[705, 998]] 1.0 7nxj Homo sapiens CMGC_CDK13_HUMAN CMGC 2.2e-85 292.5 1.0 301.0 301.0 854 855 856 858 860 734 752 756 834 836 835 837.0 896 883 878 877 876 875 874 873 872 792 Cyclin-dependent kinase 13

CMGC_CDK13 (Cyclin-dependent kinase 13)

Total number of chains: 0
Active chains: 0
Spatial label Dihedral label Number of Chains Percent Representative

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Gene SwissprotID PDB UniprotID First_obs_res Last_obs_res Length_Unp Ligand Ligand_type Activity_label Spatial_label Phe_Glu4_dis Phe_Lys_dis Dihedral_label XDFG
φ,ψ
DFG-Asp
φ,ψ
DFG-Phe
φ,ψ
DFG-Phe
χ1,χ2
DFG-Gly
φ,ψ
ChelixSaltbr_label Chelix_label Lys_Glu_dis Saltbr_label LysNZ_GluOE_dis HRD_label His φ,ψ Arg φ,ψ SNC_label SNCpymol_label ActLoop_label ActLoopNT_label DFG6_XHRD_dis ActLoopCT_label APEtype APEdihe_label APEdist_label APE10_dihe_label APE10 φ,ψ APE9_dihe_label APE9 φ,ψ APE8_dihe_label APE8 φ,ψ APE8_rotamer_label APE8 χ1 APE67_label APE6 φ,ψ APE7 φ,ψ APE12_dist_label APE12_DFG4_dis APE11_dist_label APE11_DFG4_dis APE10_dist_label APE10_DFG4_dis APE9_dist_label APE9_Arg_dis Chain_mut Chain_phos Modified_aa Method Resolution Rvalue FreeRvalue Chain_id ChainLen Ordered_residues DomainBreak ActLoopLength ActLoopResolvedResidues ActLoopDisorderedResidues Kinase_domains_Unp N_Kinase_domains_Unp pdb Species Kincore_name hmm Evalue Score hmmbeg hmmend hmmlen XDFGnum DFGnum PHEnum DFG4num DFG6num LYSnum GLUnum GLU4num XHRDnum ARGnum HRDnum HRDaspnum aFaspnum APEnum APE6num APE7num APE8num APE9num APE10num APE11num APE12num Hinge1num Protein_name