Contact information
Maxim V Shapovalov, M.S.
Basic Science Division, Biomolecular Structure and Function
Sr Programmer analyst
Mailing address:
Fox Chase Cancer Center ICR R462
333 Cottman Avenue
Philadelphia, PA 19111
USA
Phone: hidden for security purposes
E-mails:
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Maxim_dot~Chapovalov*at#fccc_dot~edu
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Maxim_dot~Shapovalov*at#yahoo_dot~com
( please replace " _dot~ " with " . " and " *at# " with " @ " respectively )
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Publications
1) Krivov G, Shapovalov MV, Dunbrack RL Jr. Improved side-chain conformation prediction in SCWRL4. Proteins, 2009 (submitted).
2) Loll PJ, Derhovanessian A, Shapovalov MV, Kaplan J, Yang L, Axelsen PH Vancomycin forms ligand-mediated supramolecular complexes. J Mol Biol, 2009 Jan 9; 385(1) : 200-11. Epub 2008 Nov 1.
3) Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL Jr. Statistical analysis of interface similarity in crystals of homologous proteins. J Mol Biol, 2008 Aug 29; 381(2):487-507. Epub 2008 Jun 7.
4) Karplus PA, Shapovalov MV, Dunbrack RL Jr, Berkholz DS A forward-looking suggestion for resolving the stereochemical restraints debate: ideal geometry functions. Acta Crystallogr D Biol Crystallogr, 2008 Mar;64(Pt 3):335-6. Epub 2008 Feb 20.
5) Shapovalov MV, Canutescu AA, Dunbrack RL Jr. BioDownloader: Bioinformatics downloads and updates in a few clicks. Bioinformatics, 2007; doi: 10.1093/bioinformatics/btm120.
6) Shapovalov MV, Dunbrack RL Jr. Statistical and conformational analysis of the electron density of protein side chains. Proteins, 2007 Feb 1;66(2):279-303.
7) Antoniou I, Ivanov VV, Kryanev AV, Matokhin VV, Shapovalov MV. On the efficient resources distribution in economics based on entropy. Physica A: Statistical and Theoretical Physics, 2004 May 15;336(3-4):549-562.
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Conference talks
1) Shapovalov M, Wang G, Dunbrack RL Jr. New Ramachandran Maps and the Next Generation of the Backbone-Dependent Rotamer Library. University of Washington Rosetta Conference (RosettaCON), Leavenworth, WA, USA, 2008.
2) Shapovalov M, Dunbrack RL Jr. The Next Generation of the Backbone-dependent Rotamer Library. 3DSIG, Conference on Intelligent Systems in Molecular Biology (ISMB), Toronto, Canada, 2008.
3) Shapovalov M, Xu Q, Wang G, Ting D, Jordan MI, Dunbrack RL Jr. Statistical Analysis of Protein Structures: Electron Density, Conformational Analysis, and Protein-protein Interfaces. American Crystallographic Association Meeting (ACA), Knoxville, TN, USA, 2008.
4) Shapovalov MV, Dunbrack RL Jr. Using electron density in structural bioinformatics. Highlights Session, Structural Bioinformatics Meeting at ISMB, Austria, 2007.
5) Xu Q, Canutescu A, Shapovalov M, Wang G, Dunbrack RL Jr. Structural bioinformatics reveals probable biological interfaces in protein crystals. 3DSIG, Conference on Intelligent Systems in Molecular Biology (ISMB), Austria, 2007.
6) Xu Q, Canutescu AA, Shapovalov MV, Dunbrack RL Jr. Identifying biologically relevant interfaces in protein crystals. American Chemical Society, Boston, USA, 2007 Aug 19-23.
7) Shapovalov MV, Dunbrack RL Jr. Using Statistical Analysis of Electron Density to Evaluate Protein Side-Chain Conformations and Rotamer Disorder. Structural Bioinformatics Meeting at ISMB, Scotland, 2004 Jul 21;31.
8) Shapovalov MV. Improving protein structure analysis and prediction by using electron denisty maps. Moscow Engineering Physics Institute Scientific Session, Russia, 2004;T-7:118-9.
9) Kryanev AV, Matokhin VV, Shapovalov MV. Assessment of resources disribution efficiency using two-parameter control function family. Moscow Engineering Physics Institute Scientific Session, Russia, 2002;T-7:101-2.
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webdesign: Maxim V. Shapovalov and Adrian A. Canutescu
