Peer reviewed publications

  • Bioinformatics And Computational Biology
    1. Statistical analysis of interface similarity in crystals of homologous proteins. Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL Jr. J. Mol. Biol., 2008, 381(2): 487-507
    2. LSNMF: A modified non-negative matrix factorization algorithm utilizing uncertainty estimates. Guoli Wang, Andrew V. Kossenkov, and Mike F. Ochs. BMC Bioinformatics, 2006, 7:175
    3. PISCES: improvements to a protein sequence culling server. Guoli Wang and Roland L. Dunbrack, Jr., Nucleic Acids Research. 2005, 33:W94-8.
    4. Quasi-consensus-based comparison of profile hidden Markov models for protein sequences. Robel Y. Kahsay, Guoli Wang, Li Liao, Roland L. Dunbrack, Jr., and Guang Gao. Bioinformatics 2005, 21:2287-2293.
    5. Scoring profile-profile sequence alignments. Guoli Wang and Roland L. Dunbrack, Jr., Protein Science 2004, 13:1612-1626.
    6. PISCES: a protein sequence culling server. Guoli Wang and Roland L. Dunbrack, Jr., Bioinformatics 2003, 19:1589-1591.
    7. CASA: a server for the critical assessment of protein sequence alignment accuracy. Robel Y. Kahsay, Guoli Wang, Nataraj Dongre, Guang Gao, and Roland L. Dunbrack, Jr., Bioinformatics 2002, 18:496-497.
    8. Fold recognition and accurate query-template alignment by a combination of PSI-BLAST and threading. Yibing Shan, Guoli Wang, and Huang-Xiang Zhou, Proteins: Structure, Function, and Genetics 2001,42:23-37.
    9. A comparison of amino acid composition of proteins from thermophiles and mesophile. Baisong Lu, Guoli Wang, and Peitang Huang, Acta Microbiologica Sinica 1998, 38(1):22-28.
  • Homology Modeling, Docking, and Molecule Design
    1. Oligomerization of BAK by p53 utilizes conserved residues of the p53 DNA binding domain. Pietsch EC, Perchiniak E, Canutescu AA, Wang G, Dunbrack RL Jr., Murphy ME. J. Biol. Chem., 2008, 283(30): 21294-304
    2. Assessment of fold recognition predictions in CASP6. Guoli Wang, Yumi Jin, and Roland L. Dunbrack, Jr., Proteins. 2005, 61 Suppl. 7:46-66.
    3. Domain definition and target classification for CASP6. Michael Tress, Chin-Hsien Tai, Guoli Wang, Iakes Ezkurdia, Gonzalo Lopez, Alfonso Valencia, Byungkook Lee, and Roland L. Dunbrack, Jr., Proteins. 2005, 61 Suppl. 7:8-18.
    4. Predicted structures of two proteins involved in human diseases. Huan-Xiang Zhou and Guoli Wang, Cell Biochem. Biophys. 2001, 35:35-47.
    5. Construction of clone vector of tissue type plasminogen activator (t-PA) mutants. Hong Zhou, Guoli Wang, Peitang Huang, Cuifen Huang. Acta Academiae Medicinae Militaris Tertiae. 2000, 22:395-398.
    6. Design of t-PA S165W mutant and its activity analysis of the affinity for fibrin. Hong Zhou, Guoli Wang, Cuifen Huang, Peitang Huang. Acta Biochimica et Biophysica Sinica 2000, 32:421-424.
    7. Human TNF mutants with selective affinity on the R55 or R75 receptor. Xiaowei Zhou, Guoli Wang, and Peitang Huang, Protein and Peptide Letters 1999, 6(1):23-26.
    8. Homology modeling of tissue-type plasminogen activator K1 domain and studies on the interactions between kringles and lysine. Guoli Wang, Shihui Liu, Xiuying Xu, Peitang Huang, and Cuifen Huang, Chinese Journal of Biotechnology 1998, 14(1):17-24.
    9. The computer simulation study on the interaction between TNF and its receptors. Guoli Wang, Xiaowei Zhou, Peitang Huang, and Cuifen Huang, Chinese Biochemical Journal 1998,14(3): 25-30.
    10. Humanization molecular design of the single-chain Fv fragment of murine antibody against human fibrin. Shihui Liu, Guoli Wang, Junjian Huang, Weiyuan Yu, Peitang Huang, and Cuifen Huang, Chinese Biochemical Journal 1997, 13(6):677-685.
    11. Computer-aid CDR-grafted humanization design of a murine McAb HAb25 variable region. Qingan Yuan, Guoli Wang, Weiyuan Yu, and Cuifen Huang, Letters in Biotechnology 1997, 8(1):25-46.
  • Theoretical Chemistry and Computational Chemistry
    1. The expansion formula of geminal N-electron basis set in terms of Slater determinants. Guoli Wang, Jingyao Liu, Zesheng Li, and Chiachung Sun, Chemical Journal of Chinese Universities 1998, 19(5):796-798.
    2. Application of geminal N-electron basis set to LiH molecule. Guoli Wang, Jingyao Liu, and Chiachung Sun, Chemical Journal of Chinese Universities 1998, 19(4):603-605.
    3. Overlapping atomic sphere SCF-Xa-SW study on Rh2(O2CH)4(H2O)2+. Guoli Wang, Zesheng Li, Chiachung Sun, and Kawamura Takashi, J. Mol. Sci. 1992, 8(2):143-148.
  • Book Chapters

    1. Guoli Wang, J. Michael Sauder, and Roland L. Dunbrack, Jr., Homology modeling and structural genomics. In: Structural Proteomics (Edwards, Al., Sundstrom, M., Norin, M., eds.). Marcel Dekker, in press.
    2. Guoli Wang and Mike F. Ochs. Estimating gene function with least squares nonnegative matrix factorization. In: Methods in Molecular Biology: Gene Function Analysis. Edited by Mike F. Ochs. Humana Press Inc. 2007.

    Conference

    1. Comparative modeling of CASP5 targets. Guoli Wang and Roland L. Dunbrack, Jr., Fifth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, Dec. 1-5, 2002, Pacific Grove, California.
    2. Profile-profile alignment with statistically-sound score scheme (DIMSUM). Guoli Wang and Roland L. Dunbrack, Jr., Sixteenth Symposium of The Protein Society, Aug. 17-21, 2002, San Diego, California.
    3. Benchmarks for protein structure prediction. Guoli Wang and Roland L. Dunbrack, Jr., Fifteenth Symposium of The Protein Society, Jul. 28-Aug. 1, 2001, Philadelphia, Pennsylvania.
    4. Highly conserved glycines and their role as folding nucleation sites. Huang-Xiang Zhou and Guoli Wang, Biophysical Journal, the 45th annual meeting, Feb. 17-21, 2001, Boston, Massachusetts.

    Technical report

  • Projecting the years of structure determination needed for complete annotation of 32 genomes. Huang-Xiang Zhou and Guoli Wang
    (http://cmbph1.physics.drexel.edu/projecting.html)